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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pnp
DDBJ      :pnp          polyribonucleotide nucleotidyltransferase
Swiss-Prot:PNP_PELUB    RecName: Full=Polyribonucleotide nucleotidyltransferase;         EC=2.7.7.8;AltName: Full=Polynucleotide phosphorylase;         Short=PNPase;

Homologs  Archaea  31/68 : Bacteria  886/915 : Eukaryota  127/199 : Viruses  0/175   --->[See Alignment]
a.4.9b.40.4c.1.25d.101.1d.14.1d.26.2d.51.1
:690 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->542 3gcmA PDBj e-154 53.7 %
:BLT:PDB   525->612 2annA PDBj 7e-08 29.5 %
:BLT:PDB   614->688 1sroA PDBj 1e-18 54.7 %
:RPS:PDB   7->570 1e3hA PDBj e-166 38.2 %
:RPS:PDB   551->690 2e3uA PDBj 1e-19 15.9 %
:RPS:SCOP  13->101 1e44A  d.26.2.1 * 2e-19 10.1 %
:RPS:SCOP  145->234 1e3hA5  d.101.1.1 * 2e-26 28.9 %
:RPS:SCOP  240->319 1e3hA1  a.4.9.1 * 8e-17 26.2 %
:RPS:SCOP  295->468 2nn6E1  d.14.1.4 * 9e-43 19.0 %
:RPS:SCOP  457->633 1l2qA  c.1.25.1 * 8e-34 14.9 %
:RPS:SCOP  614->688 1sroA  b.40.4.5 * 2e-20 53.3 %
:HMM:SCOP  1->144 1e3hA2 d.14.1.4 * 1.8e-51 46.5 %
:HMM:SCOP  145->238 1e3hA5 d.101.1.1 * 3.8e-31 50.0 %
:HMM:SCOP  237->319 1e3hA1 a.4.9.1 * 1.9e-19 32.5 %
:HMM:SCOP  320->455 1e3hA3 d.14.1.4 * 6.1e-43 39.7 %
:HMM:SCOP  450->557 1udsA2 d.101.1.1 * 1.7e-30 38.5 %
:HMM:SCOP  537->633 1we8A_ d.51.1.1 * 3.5e-22 32.3 %
:HMM:SCOP  605->687 1q46A2 b.40.4.5 * 4.5e-22 39.8 %
:RPS:PFM   14->108 PF01138 * RNase_PH 8e-08 30.6 %
:RPS:PFM   148->210 PF03725 * RNase_PH_C 6e-07 49.2 %
:RPS:PFM   251->317 PF03726 * PNPase 2e-06 40.3 %
:RPS:PFM   323->453 PF01138 * RNase_PH 1e-12 33.1 %
:RPS:PFM   456->525 PF03725 * RNase_PH_C 2e-04 47.2 %
:RPS:PFM   617->685 PF00575 * S1 2e-13 49.3 %
:HMM:PFM   14->144 PF01138 * RNase_PH 1.3e-24 35.0 123/132  
:HMM:PFM   322->453 PF01138 * RNase_PH 6.4e-23 29.4 126/132  
:HMM:PFM   147->211 PF03725 * RNase_PH_C 5.4e-22 46.2 65/68  
:HMM:PFM   457->526 PF03725 * RNase_PH_C 1.3e-12 36.9 65/68  
:HMM:PFM   240->318 PF03726 * PNPase 4.3e-19 36.7 79/83  
:HMM:PFM   617->684 PF00575 * S1 7.6e-19 33.8 68/74  
:HMM:PFM   553->609 PF00013 * KH_1 2.2e-14 40.0 55/57  
:BLT:SWISS 1->690 PNP_PELUB 0.0 100.0 %
:REPEAT 2|6->264|311->588
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21213.1 GT:GENE pnp GT:PRODUCT polyribonucleotide nucleotidyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 383206..385278 GB:FROM 383206 GB:TO 385278 GB:DIRECTION + GB:GENE pnp GB:PRODUCT polyribonucleotide nucleotidyltransferase GB:PROTEIN_ID AAZ21213.1 GB:DB_XREF GI:71062210 GB:GENE:GENE pnp LENGTH 690 SQ:AASEQ MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVAGTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSEVKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLFADDENYSDFNVNDELKNLEKKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRERFMLHYNFPPFSVGETGRIGTGRREVGHGKLAWRAINSSLPPKEEFPYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDILGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKALSESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPDEESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEKVTDIVKEGDEVKVKVIGFDRGKVKLSMKQAAE GT:EXON 1|1-690:0| SW:ID PNP_PELUB SW:DE RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8;AltName: Full=Polynucleotide phosphorylase; Short=PNPase; SW:GN Name=pnp; OrderedLocusNames=SAR11_0392; SW:KW Complete proteome; Cytoplasm; Nucleotidyltransferase; RNA-binding;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->690|PNP_PELUB|0.0|100.0|690/690| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| NREPEAT 1 REPEAT 2|6->264|311->588| SEG 128->141|ilaitassaalais| SEG 385->399|vgetgrigtgrrevg| BL:PDB:NREP 3 BL:PDB:REP 16->542|3gcmA|e-154|53.7|527/544| BL:PDB:REP 525->612|2annA|7e-08|29.5|88/148| BL:PDB:REP 614->688|1sroA|1e-18|54.7|75/76| RP:PDB:NREP 2 RP:PDB:REP 7->570|1e3hA|e-166|38.2|552/585| RP:PDB:REP 551->690|2e3uA|1e-19|15.9|138/166| RP:PFM:NREP 6 RP:PFM:REP 14->108|PF01138|8e-08|30.6|89/130|RNase_PH| RP:PFM:REP 148->210|PF03725|6e-07|49.2|63/68|RNase_PH_C| RP:PFM:REP 251->317|PF03726|2e-06|40.3|67/83|PNPase| RP:PFM:REP 323->453|PF01138|1e-12|33.1|127/130|RNase_PH| RP:PFM:REP 456->525|PF03725|2e-04|47.2|65/68|RNase_PH_C| RP:PFM:REP 617->685|PF00575|2e-13|49.3|69/74|S1| HM:PFM:NREP 7 HM:PFM:REP 14->144|PF01138|1.3e-24|35.0|123/132|RNase_PH| HM:PFM:REP 322->453|PF01138|6.4e-23|29.4|126/132|RNase_PH| HM:PFM:REP 147->211|PF03725|5.4e-22|46.2|65/68|RNase_PH_C| HM:PFM:REP 457->526|PF03725|1.3e-12|36.9|65/68|RNase_PH_C| HM:PFM:REP 240->318|PF03726|4.3e-19|36.7|79/83|PNPase| HM:PFM:REP 617->684|PF00575|7.6e-19|33.8|68/74|S1| HM:PFM:REP 553->609|PF00013|2.2e-14|40.0|55/57|KH_1| GO:PFM:NREP 16 GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF03725|IPR015847| GO:PFM GO:0006396|"GO:RNA processing"|PF03725|IPR015847| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03726|IPR015848| GO:PFM GO:0003723|"GO:RNA binding"|PF03726|IPR015848| GO:PFM GO:0006396|"GO:RNA processing"|PF03726|IPR015848| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF03725|IPR015847| GO:PFM GO:0006396|"GO:RNA processing"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 6 RP:SCP:REP 13->101|1e44A|2e-19|10.1|79/84|d.26.2.1| RP:SCP:REP 145->234|1e3hA5|2e-26|28.9|90/111|d.101.1.1| RP:SCP:REP 240->319|1e3hA1|8e-17|26.2|80/83|a.4.9.1| RP:SCP:REP 295->468|2nn6E1|9e-43|19.0|168/181|d.14.1.4| RP:SCP:REP 457->633|1l2qA|8e-34|14.9|174/457|c.1.25.1| RP:SCP:REP 614->688|1sroA|2e-20|53.3|75/76|b.40.4.5| HM:SCP:REP 1->144|1e3hA2|1.8e-51|46.5|144/149|d.14.1.4|1/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 145->238|1e3hA5|3.8e-31|50.0|94/111|d.101.1.1|1/2|Ribonuclease PH domain 2-like| HM:SCP:REP 237->319|1e3hA1|1.9e-19|32.5|83/0|a.4.9.1|1/1|Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3| HM:SCP:REP 320->455|1e3hA3|6.1e-43|39.7|136/137|d.14.1.4|2/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 450->557|1udsA2|1.7e-30|38.5|104/105|d.101.1.1|2/2|Ribonuclease PH domain 2-like| HM:SCP:REP 537->633|1we8A_|3.5e-22|32.3|96/0|d.51.1.1|1/1|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 605->687|1q46A2|4.5e-22|39.8|83/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1740 OP:NHOMOORG 1044 OP:PATTERN -------11111111111-----1--------111-------------11-1111111111111-1-- 1211222111121222222-2222222222222222222222222212222122222211222112222212222222122111111111111111111111111111111111121222222221221111111111132111221111111111111111111111111111111111111122112112243333333333333333244243332123334222322123334444444333443333211-111111112222111211--22222221221221111111111-2211222222222212222222215224444333334342223122244232121233233333132221111112111111111111111111111111111111111-11111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222221111211111111112222222222221112111322121111121211112112111111111111111111111111111111112223222222222222222222222222221-2121122222222222222222222222-2222222222222222222222222222222112111222222222222222122222222222222112222211111222222222222212133211111112222222222222222222222222222222233322222222222222222222222221111111111111111111221111---------------------1111111121122 ----1-1---------1--112212121111111--1------11111111----11--1-1---------1---111111-----1-----1--------1------2122311121121222341328I2-253211122222223113213-322112-22-12421642213-13K2321141171422242221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 690 STR:RPRED 100.0 SQ:SECSTR ccccEEEcGGGcEEEEEEEEccccTTccEEEEEEETTTEEEEEEEEcccccTTcccccEEEEEEEcGGGGTcccccTTcccccccHHHHHHHHHHHHHHHHHccTTccccEEEEEEEEEccTTcccHHHHHHHHHHHHHHTTcccccccEEEEEEEETTEEEEcccHHHHTTEEEEEEEEEcTTHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTTcTTcHHHHHHHHHHHHHHHHHHHHHHTcccTTcccTTccccEEEEEcccccccEEEEEEETTEEEEEEEEEEGcTGcEEccccccccEEcEEEEEEccGGGTcccccccccHHHHHHHHHHHHHHGGGcccTTTccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHTcccccccEEEEEEEEEEETEEEEEcccccHHHHHccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccTTccccccHHHHccccccccccccHHHHccGGGTccccccHHHHHHHHHHHHcTTcccccccccccccccccHHHHccccEEEcccccEEcccccccccccccGGcccccccHHHHccccccccccccccccTEEEEEccTTcc DISOP:02AL 1-2, 50-55, 71-88, 357-369, 384-402, 689-690| PSIPRED ccccEEEEEEEccEEEEEEEccEEEccccEEEEEEcccEEEEEEEEccccccccccccEEEEEEEEHHHHHcccccEEEccccccHHHHHHHHHHHHHHHHHcHHHccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccEEEEcccHHHHHcccEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccccccccEEEEEEccEEEEEEEEEccccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHccHHHHHHHccccccEEEEccccEEEEccccccccccccEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEEEEEEcHHHHHHHcccccccHHHHHcccccEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEEEccccccEEEEEEccccccccHHHHcccccEEEEEEEEEcccEEEEcHHHHcc //