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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : polA
DDBJ      :polA         DNA polymerase I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  96/199 : Viruses  13/175   --->[See Alignment]
a.60.2a.60.7c.120.1c.55.3e.8.1
:924 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   69->225 1ut5B PDBj 2e-10 28.7 %
:BLT:PDB   319->924 1d9dA PDBj e-129 41.5 %
:RPS:PDB   5->924 1bgxT PDBj e-180 35.2 %
:RPS:SCOP  9->178 1exnA2  c.120.1.2 * 1e-36 21.4 %
:RPS:SCOP  196->229 2a1jA1  a.60.2.5 * 9e-06 20.6 %
:RPS:SCOP  229->546 2hbjA2  c.55.3.5 * 7e-42 12.5 %
:RPS:SCOP  509->924 1bgxT4  e.8.1.1 * e-126 40.7 %
:HMM:SCOP  7->179 1bgxT2 c.120.1.2 * 9.5e-55 48.5 %
:HMM:SCOP  179->283 1xo1A1 a.60.7.1 * 4.1e-36 50.5 %
:HMM:SCOP  318->508 1kfsA1 c.55.3.5 * 2.6e-49 35.6 %
:HMM:SCOP  513->924 1t7pA2 e.8.1.1 * 3.1e-135 44.0 %
:RPS:PFM   8->178 PF02739 * 5_3_exonuc_N 2e-47 56.4 %
:RPS:PFM   180->271 PF01367 * 5_3_exonuc 1e-23 55.4 %
:RPS:PFM   327->500 PF01612 * 3_5_exonuc 3e-26 43.7 %
:RPS:PFM   549->922 PF00476 * DNA_pol_A e-105 51.9 %
:HMM:PFM   537->921 PF00476 * DNA_pol_A 2.9e-117 42.7 379/383  
:HMM:PFM   10->178 PF02739 * 5_3_exonuc_N 3.9e-52 42.0 162/169  
:HMM:PFM   324->506 PF01612 * 3_5_exonuc 1.9e-39 35.5 172/174  
:HMM:PFM   181->279 PF01367 * 5_3_exonuc 6e-33 51.5 99/101  
:BLT:SWISS 7->924 DPO1_HAEIN 0.0 39.4 %
:PROS 744->763|PS00447|DNA_POLYMERASE_A
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21022.1 GT:GENE polA GT:PRODUCT DNA polymerase I GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(200829..203603) GB:FROM 200829 GB:TO 203603 GB:DIRECTION - GB:GENE polA GB:PRODUCT DNA polymerase I GB:PROTEIN_ID AAZ21022.1 GB:DB_XREF GI:71062019 GB:GENE:GENE polA LENGTH 924 SQ:AASEQ MDKIKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQKPTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEADDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPEKVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENKDKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYGEPLLEETAKETKPEKKHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVLYKQGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVELDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISKKEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTESDLHTFSTPLTVDVNTGDNWGILH GT:EXON 1|1-924:0| BL:SWS:NREP 1 BL:SWS:REP 7->924|DPO1_HAEIN|0.0|39.4|900/930| PROS 744->763|PS00447|DNA_POLYMERASE_A|PDOC00412| COIL:NAA 30 COIL:NSEG 1 COIL:REGION 536->565| SEG 304->315|eetaketkpekk| BL:PDB:NREP 2 BL:PDB:REP 69->225|1ut5B|2e-10|28.7|157/272| BL:PDB:REP 319->924|1d9dA|e-129|41.5|595/601| RP:PDB:NREP 1 RP:PDB:REP 5->924|1bgxT|e-180|35.2|816/828| RP:PFM:NREP 4 RP:PFM:REP 8->178|PF02739|2e-47|56.4|163/165|5_3_exonuc_N| RP:PFM:REP 180->271|PF01367|1e-23|55.4|92/100|5_3_exonuc| RP:PFM:REP 327->500|PF01612|3e-26|43.7|158/171|3_5_exonuc| RP:PFM:REP 549->922|PF00476|e-105|51.9|360/360|DNA_pol_A| HM:PFM:NREP 4 HM:PFM:REP 537->921|PF00476|2.9e-117|42.7|379/383|DNA_pol_A| HM:PFM:REP 10->178|PF02739|3.9e-52|42.0|162/169|5_3_exonuc_N| HM:PFM:REP 324->506|PF01612|1.9e-39|35.5|172/174|3_5_exonuc| HM:PFM:REP 181->279|PF01367|6e-33|51.5|99/101|5_3_exonuc| GO:PFM:NREP 11 GO:PFM GO:0003677|"GO:DNA binding"|PF02739|IPR020046| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF02739|IPR020046| GO:PFM GO:0003677|"GO:DNA binding"|PF01367|IPR020047| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF01367|IPR020047| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01612|IPR002562| GO:PFM GO:0005622|"GO:intracellular"|PF01612|IPR002562| GO:PFM GO:0006139|"GO:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"|PF01612|IPR002562| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF01612|IPR002562| GO:PFM GO:0003677|"GO:DNA binding"|PF00476|IPR001098| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00476|IPR001098| GO:PFM GO:0006260|"GO:DNA replication"|PF00476|IPR001098| RP:SCP:NREP 4 RP:SCP:REP 9->178|1exnA2|1e-36|21.4|154/166|c.120.1.2| RP:SCP:REP 196->229|2a1jA1|9e-06|20.6|34/62|a.60.2.5| RP:SCP:REP 229->546|2hbjA2|7e-42|12.5|289/292|c.55.3.5| RP:SCP:REP 509->924|1bgxT4|e-126|40.7|403/406|e.8.1.1| HM:SCP:REP 7->179|1bgxT2|9.5e-55|48.5|163/173|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 179->283|1xo1A1|4.1e-36|50.5|105/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| HM:SCP:REP 318->508|1kfsA1|2.6e-49|35.6|188/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 513->924|1t7pA2|3.1e-135|44.0|402/494|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 1498 OP:NHOMOORG 1016 OP:PATTERN -------------------------------------------------------------------- 1221211111111122222-22112222222222222222212222121111222111112231222222111111111111222222111111111--1111111111111111111111111111111111111111111111112111111111111111111111111111111111112111111112222222332222222222222222321132142222222222222222222222222222111111112111111121111111111111111111111111111111111211111111111111111112112111111111111221111112112212122212111111111111111111111111111111111111111111111111-111131111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1121111111111121111112112211111111111111111111111111111111111222111222122122111111111111111111111111111112221122112222222222222222222221-1111211111122222222221222222-22222222222222222222222222222222222222322222222222221233323323222111111111111111112111111111111111111111111111111111111111111111111111111222222222222222222222222111111111111111111111111111112-11211111111211111111111111111111 33--431-B55---1---------------------------------------------------------------------------------------------42511222-2121222572516F2-4251112222211221122-72131212112212111311212244K4444264A7-552332111 -------1----------------------------------------------11-----------1-1-------------------11-----1-----------------1-----------------------1----------1-1--------1-------------- STR:NPRED 897 STR:RPRED 97.1 SQ:SECSTR ####cccTTcccccccTHHHHTTcccTTcccccccccccccTTHHHHHHHGGGTcHHHGGGcccccccccccccccccccGGGGTTTcccccccTTcTTGGGTHHHHHHHTTccccccccccHHHHHHHHHHHHHHHTcccccccccTTccTTccTTcccccccccccEccTTHHHHTcccGGGTTTTTTccccccccccccccccccTTTTTGGGTTcccccccccccccTHTTcHHHHcccccTTcGGGccccccccccccccccTccccccHHHHHHHHTTTTcccTTTc#######################ccccccccEEcccccTcGGGTTccccccccccccEEEcccccTTcccEEEcccccTTTccccEEEcccccEETcEEEccccHHHHHHHccccccTTHHHHHHHHHHHccccccccHHHHHHHHcTTcccccTTHHHHHHcccccccHHHHHccGGGcccccHccHHcccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHTTHHHHHHHHHHHHHHcccccTTTHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHTTTTTTcccccccccccccccGGGTcTTTTGGGTGccTTHHHHTHHHHccccTTccccTTTcccTTTcccccEEEcccccccccEEEcccTTccccccTTTTTTGGGccccccccEEEEEEccHHHHHHHHTTTcTTHHHHHHHTccHHHHHHHHHHTccTTcccTTHHHHHHHHHHHTTccccHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHTHHHHTTcccccccccccccGGGccccHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHTTHHTcEEEEEETTEEEEEccHHHHHHHHHHHHcccHTcccHHTccccccccEEccEEccHHHHc DISOP:02AL 1-6| PSIPRED cccccccccEEEEEcHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccEEEEEcccccEEcHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcEEccccHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHccccccccccccccEEEccHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcEEEEccccccEEEccccccccccccccccHHHcEEEEEccccEEEEEEccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEcccccEEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHc //