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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : potC
DDBJ      :potC         spermidine/putrescine transport system permease protein potc
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  661/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   88->235 2onkC PDBj 6e-12 23.6 %
:RPS:PDB   176->212 3dhwA PDBj 3e-08 27.0 %
:RPS:SCOP  24->266 2r6gG1  f.58.1.1 * 1e-19 21.2 %
:RPS:PFM   119->229 PF00528 * BPD_transp_1 3e-08 28.8 %
:HMM:PFM   96->275 PF00528 * BPD_transp_1 2.1e-18 24.6 171/185  
:BLT:SWISS 49->269 POTC_SHIFL 2e-25 27.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22138.1 GT:GENE potC GT:PRODUCT spermidine/putrescine transport system permease protein potc GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1270649..1271503) GB:FROM 1270649 GB:TO 1271503 GB:DIRECTION - GB:GENE potC GB:PRODUCT spermidine/putrescine transport system permease protein potc GB:PROTEIN_ID AAZ22138.1 GB:DB_XREF GI:71063135 GB:GENE:GENE potC LENGTH 284 SQ:AASEQ MALPTYTSWNYRIWHYTYLTICGLVFFFLIAPLFVILPLSFNAEQYIHFSKGMIALDPDAFSLRWYEDMIYGTKNPWGLATKNSLIIAFFATIGSTVLGTVAALGLSSRHMPYKAAFMALLISPMIVPLIISGTAIFFFMAKVGLAATHTGIILSHIILGTPFVVITVTATLTGFDHSVTRAASSLGSNPVNTFMKITLPLILPGVISGALFAFVTSFDEVVVVLFLAGLENTTIPIQMWVGLREQLSPTIMAVATCLIIMSTLILVSAELLRRRSERLRGINR GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 49->269|POTC_SHIFL|2e-25|27.4|219/264| TM:NTM 6 TM:REGION 18->40| TM:REGION 83->105| TM:REGION 118->140| TM:REGION 151->173| TM:REGION 201->223| TM:REGION 249->271| SEG 270->280|ellrrrserlr| BL:PDB:NREP 1 BL:PDB:REP 88->235|2onkC|6e-12|23.6|148/252| RP:PDB:NREP 1 RP:PDB:REP 176->212|3dhwA|3e-08|27.0|37/203| RP:PFM:NREP 1 RP:PFM:REP 119->229|PF00528|3e-08|28.8|111/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 96->275|PF00528|2.1e-18|24.6|171/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 24->266|2r6gG1|1e-19|21.2|241/284|f.58.1.1| OP:NHOMO 2667 OP:NHOMOORG 705 OP:PATTERN 111-41----------213211-3522-4122---111233231-11---1---2433311-1----- -21-7-11---1--32222-2111232222232333345521-32841343-65521---1-4151255741222253----3-----222212------------------------------1------12-1154434---54--31---2311------1-123422------------1421-25-12-111-1321211132182222-11214335112332339C2-----------------113212111-11122111111-1131111112222211233322222222222222222222211111111242324333424424242222233614123332-332-1271--2112111---3223-----12HEE336446547798787688H-43833845DU1-PJJMHCORNLRLH8---4AHD8EHJ88222222221---1336-----------------------------1---1-4886365665932554CCHKA9784796H5253--1124222224F77K213-121212333323212-111181--62--3224112-------112123-21--------------------------2261423--1123333222333424224221--1--2------45543736556665666-5666665766565666665777872336677767776676776355566653-455545555555---------11111-44A2226342112121131111112-1231766699DA89B9A4A89222222222-1221222222224333223223331111---3331111111-1----1211111---1--11----111--1121652236253-1- --------------------------------------------------------------------------------------------------------------------------------------------------------------3----1------------11----------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 148 STR:RPRED 52.1 SQ:SECSTR #######################################################################################HHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcTTcTTTTTcHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHccHHHHTTccccccHHHHH################################################# DISOP:02AL 1-3, 5-6, 280-284| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccEEccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //