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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : potD
DDBJ      :potD         spermidine/putrescine-binding periplasmic protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  121/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:373 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   24->372 3ef7A PDBj 1e-15 10.6 %
:RPS:SCOP  24->369 1potA  c.94.1.1 * 1e-12 17.8 %
:HMM:SCOP  21->372 1a99A_ c.94.1.1 * 8.8e-38 25.8 %
:HMM:PFM   209->220 PF07846 * Metallothio_7 3e-05 66.7 12/21  
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22140.1 GT:GENE potD GT:PRODUCT spermidine/putrescine-binding periplasmic protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1272839..1273960) GB:FROM 1272839 GB:TO 1273960 GB:DIRECTION - GB:GENE potD GB:PRODUCT spermidine/putrescine-binding periplasmic protein GB:PROTEIN_ID AAZ22140.1 GB:DB_XREF GI:71063137 GB:GENE:GENE potD LENGTH 373 SQ:AASEQ MKKLSKLLLALSFVLSITTSAFAVTVVSWGGAYTESQKLGYGDPTAAKLGIPVNWVDYTGGLSEIKAQKEAGKITWDIIDVYAKDTIVGCDEGIFHEFDFDKDFAPAPDGTPASQDFFTSMPSKCAVGNILYSWNYAYNDATIGAKKPNSLKDFFDTKNFPGKRAIYKGAMSNLEIAITADGVNPGKGSDLTYRKLDADGGIDRAMNKLKALCTDPNGGCVFWNAGAQPPELLANGEVVMATGWNGRFFNAQMEGTPLVQVWDGQILDYEYFALVKDGPGYADGSAMKVLREMTSSEGLAGSAKYIAYAPWRKSSIAVMEAGEPWFKDGKTSMVPHMPTAPANTKRYILMNPDFWADNQDEIGEKWEAMKAGL GT:EXON 1|1-373:0| TM:NTM 1 TM:REGION 8->30| SEG 2->16|kklsklllalsfvls| SEG 98->109|fdfdkdfapapd| RP:PDB:NREP 1 RP:PDB:REP 24->372|3ef7A|1e-15|10.6|331/467| HM:PFM:NREP 1 HM:PFM:REP 209->220|PF07846|3e-05|66.7|12/21|Metallothio_7| RP:SCP:NREP 1 RP:SCP:REP 24->369|1potA|1e-12|17.8|303/322|c.94.1.1| HM:SCP:REP 21->372|1a99A_|8.8e-38|25.8|314/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 216 OP:NHOMOORG 122 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------------------------------------311---1-1--22222121121---2--2--16--2111112114531-----172223213---------11-1--1-----------------------------1------111-111112-111-3336221111114--1---111------12114-----------------------------------------------------------------------------------1-------------------------------1----------21--1---------------------------------11------------------------------11111111111-----------------1---------------------------44442422333321222--------------------1---------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 355 STR:RPRED 95.2 SQ:SECSTR #################EccTTcEEEEEcTTccHHHHHHHHHHHHHHHHcccEEEEccTTHHHHHHHHGGGTcccccEEEEEGGGHHHHHHTTccccccccHHHHTTccccHHHHHHTEETTEEccEEEEEEccEEEEETTTcccccccccTTHHHHHHHHHTTTcEEEccccHHHHHHTTcEEEEEccEEEEEEETccHHHHHHHHHHHHHHHcHTTcccTTccHHHHHHHHHHTcEEEEEEcGGGHHHHHHTTccETTEEcccEEEEEEEEEcTTcTTHHHHHHHHHHHHTTccHHHHHHHHHHccccEEccHHHHHHHTTcHHHHTTTTcHHHHHHHHHHHHcEEccccTTHHHHHHHHHHHHHHHHTT# DISOP:02AL 372-374| PSIPRED cHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHcccccEEEEEEcHHHHHHHHHcccccccccHHccccccccccHHcccccccccccEEEEEEEEEEEEEEHHHHcccccccHHHHcccHHccccEEEEcccHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccEEEEEEEcHHHHHHHHccccEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHccHHHHHcccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc //