[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ppiA
DDBJ      :ppiA         peptidylprolyl cis-trans isomerase precursor
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  483/915 : Eukaryota  178/199 : Viruses  0/175   --->[See Alignment]
b.62.1
:214 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   57->192 1j2aA PDBj 1e-15 38.1 %
:RPS:PDB   50->199 2b71A PDBj 2e-18 30.5 %
:RPS:SCOP  50->193 1a33A  b.62.1.1 * 3e-15 28.7 %
:HMM:SCOP  50->214 1v9tA_ b.62.1.1 * 6.2e-33 32.3 %
:RPS:PFM   63->194 PF00160 * Pro_isomerase 8e-20 36.6 %
:HMM:PFM   62->209 PF00160 * Pro_isomerase 3.2e-34 35.0 140/155  
:BLT:SWISS 51->199 PPI1_BRUSU 1e-26 37.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22135.1 GT:GENE ppiA GT:PRODUCT peptidylprolyl cis-trans isomerase precursor GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1266439..1267083 GB:FROM 1266439 GB:TO 1267083 GB:DIRECTION + GB:GENE ppiA GB:PRODUCT peptidylprolyl cis-trans isomerase precursor GB:PROTEIN_ID AAZ22135.1 GB:DB_XREF GI:71063132 GB:GENE:GENE ppiA LENGTH 214 SQ:AASEQ MIKKIKASKSEKLIFIFLILLAITTFCTYFIVKNKCLFVKNIDPKNITFKNPNNIAVLNAPCGNVIIELYPNISPNAVQRFVTLIRSNAYENIAFHRVIENKLIQAGDLEFGKKGNLDYGKIGTGKSGLGTIKSEIDNDFNYTKGSVGLARTFKNDTEDSQFFIILQDEPLFEGEYTPVGKVLYGLEVLKKIKSDKRSEYILRPDFINSFKMLN GT:EXON 1|1-214:0| BL:SWS:NREP 1 BL:SWS:REP 51->199|PPI1_BRUSU|1e-26|37.2|148/196| TM:NTM 1 TM:REGION 12->33| SEG 13->28|lififlillaittfct| BL:PDB:NREP 1 BL:PDB:REP 57->192|1j2aA|1e-15|38.1|126/166| RP:PDB:NREP 1 RP:PDB:REP 50->199|2b71A|2e-18|30.5|141/169| RP:PFM:NREP 1 RP:PFM:REP 63->194|PF00160|8e-20|36.6|123/151|Pro_isomerase| HM:PFM:NREP 1 HM:PFM:REP 62->209|PF00160|3.2e-34|35.0|140/155|Pro_isomerase| GO:PFM:NREP 2 GO:PFM GO:0003755|"GO:peptidyl-prolyl cis-trans isomerase activity"|PF00160|IPR002130| GO:PFM GO:0006457|"GO:protein folding"|PF00160|IPR002130| RP:SCP:NREP 1 RP:SCP:REP 50->193|1a33A|3e-15|28.7|136/174|b.62.1.1| HM:SCP:REP 50->214|1v9tA_|6.2e-33|32.3|155/0|b.62.1.1|1/1|Cyclophilin-like| OP:NHOMO 1198 OP:NHOMOORG 674 OP:PATTERN ------------------------------1-111---22221------1-----------1----22 --2------------------------------------------1--------------------------------1-11---1----------------------1---------------------2---2222212---1-1---11------11------1---21-1-111-1-11333-----11----------------2-1111----11121-------21-11111111111111--------1--1-------------111111111----1---111111111-1111111111111---1-1---1-21121111111212211112221111--21-1111--------------1--222-22222222222222222222222222222-22222221221-22222222222221-1-22222222221111111111111111-----------------------------211222----11111111111111221111111122222--22-2121111111222--112-1--1111-1-2221-2---1312-11121222122212-------2-11-1------111111111-1-----211122-11-21-----11----1-1--11---11--------22222222222222122-2222222222222222222222221112222222222222222222222222-222222222222---1----------1211---11111111111122222121111122221121222221222---------1111------11111--111111111111-112----------------2------------------------------------1- 2111323-4-1-23235232222211122112222223323332111123322223112121123-121111-121212221--1143-13255422112113512-25353221221-1113186-5-BI5144411112-1342---23--5-334233-23331121353531422W212-3B1142322222222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 171 STR:RPRED 79.9 SQ:SECSTR ##########################################cccEEEEHHHccEEEEEETTEEEEEEEcTTTcHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTcccccccccccccccccTTccccccccTTcccccTTEEEEccccTTcccccEEEEccccGGGTTTccEEEEEEEcHHHHHHHHTccccTTTTEEEEEEEEEEE# DISOP:02AL 1-9| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEEccccccHHHHHHHHHHHcccccccEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEEcccccccccEEEEEEEEccHHHHHHHHcccccccccccEEEEEEEEEc //