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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : prfA
DDBJ      :prfA         protein release factor Class I (RF-1)
Swiss-Prot:RF1_PELUB    RecName: Full=Peptide chain release factor 1;         Short=RF-1;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:357 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->356 3d5aX PDBj 2e-73 44.9 %
:RPS:PDB   59->354 2b3tB PDBj 2e-85 48.6 %
:RPS:SCOP  7->348 1gqeA  e.38.1.1 * 9e-91 35.2 %
:HMM:SCOP  31->357 1rq0A_ e.38.1.1 * 2.7e-91 43.6 %
:RPS:PFM   71->178 PF03462 * PCRF 4e-22 50.9 %
:RPS:PFM   208->305 PF00472 * RF-1 1e-13 41.8 %
:HMM:PFM   209->320 PF00472 * RF-1 1.2e-40 44.6 112/114  
:HMM:PFM   66->178 PF03462 * PCRF 9.2e-39 54.0 113/116  
:BLT:SWISS 1->357 RF1_PELUB 0.0 100.0 %
:PROS 227->243|PS00745|RF_PROK_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21340.1 GT:GENE prfA GT:PRODUCT protein release factor Class I (RF-1) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 507318..508391 GB:FROM 507318 GB:TO 508391 GB:DIRECTION + GB:GENE prfA GB:PRODUCT protein release factor Class I (RF-1) GB:PROTEIN_ID AAZ21340.1 GB:DB_XREF GI:71062337 GB:GENE:GENE prfA LENGTH 357 SQ:AASEQ MIPLKTIEDLISKHSILEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKDLEKILSDSNSDNEFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTGGLEASLFAADLFKMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESGVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTTDSAVRITHIPTGLSVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGTGDRSERIRTYNFPQGRVTDHRINLTLHKLEAFLEGEAFDEMVENLTLQAQEEKLSNLN GT:EXON 1|1-357:0| SW:ID RF1_PELUB SW:DE RecName: Full=Peptide chain release factor 1; Short=RF-1; SW:GN Name=prfA; OrderedLocusNames=SAR11_0518; SW:KW Complete proteome; Cytoplasm; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->357|RF1_PELUB|0.0|100.0|357/357| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 227->243|PS00745|RF_PROK_I|PDOC00607| SEG 271->286|lilrsrlyelersrie| BL:PDB:NREP 1 BL:PDB:REP 27->356|3d5aX|2e-73|44.9|325/354| RP:PDB:NREP 1 RP:PDB:REP 59->354|2b3tB|2e-85|48.6|282/300| RP:PFM:NREP 2 RP:PFM:REP 71->178|PF03462|4e-22|50.9|108/115|PCRF| RP:PFM:REP 208->305|PF00472|1e-13|41.8|98/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 209->320|PF00472|1.2e-40|44.6|112/114|RF-1| HM:PFM:REP 66->178|PF03462|9.2e-39|54.0|113/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 7->348|1gqeA|9e-91|35.2|335/362|e.38.1.1| HM:SCP:REP 31->357|1rq0A_|2.7e-91|43.6|326/333|e.38.1.1|1/1|Release factor| OP:NHOMO 2199 OP:NHOMOORG 1101 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222222222222112222222222222222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222233222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222232222222222322222221122222222122222222222222222222222222222233333332222222222222222222222222222222222221222222222222222222222222122222122222212222222222122333323323-22233333332332323332223322332332232222333331323231222222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222222222 23--221-511-1111111111111111111111111111111111111111111111111111111111111111111111111111-21111111111111111-1512322233222124321231BJ2-32421222-222222222123222232111111-122311114254M33323446618B3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 354 STR:RPRED 99.2 SQ:SECSTR ###HHHHHHHTHHHHHHHHHTTcTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHcccccccccccGGGccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEcTTccEEEEEEEEcccccHHHHGGGcEEEEEEEccTTccccccEEEEEEEEccccccTTccccccccEEEEEcccccccTTTcccccEEEEEEETTTccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTccccccccEEEEEETTTTEEEEGGGTEEEccHHHHHHTccTHHHHHHHHHHHHHHHccHHc DISOP:02AL 281-305, 355-357| PSIPRED ccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEEcccccccccccHHHEEEEEEEccccccccccEEccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccEEEEEEcccccccHHHHccccHHHHHHHHHHHHHHHHHHHcc //