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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : prfB
DDBJ      :prfB         bacterial peptide chain release factor 2 (RF-2)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->280 1gqeA PDBj 3e-81 57.8 %
:RPS:PDB   1->280 2b3tB PDBj 1e-87 38.0 %
:RPS:SCOP  3->280 1gqeA  e.38.1.1 * 5e-91 50.2 %
:HMM:SCOP  1->284 1gqeA_ e.38.1.1 * 2.5e-96 46.6 %
:RPS:PFM   6->113 PF03462 * PCRF 3e-13 40.7 %
:RPS:PFM   155->232 PF00472 * RF-1 5e-18 57.7 %
:HMM:PFM   144->256 PF00472 * RF-1 1.1e-43 50.9 112/114  
:HMM:PFM   6->113 PF03462 * PCRF 4e-33 36.1 108/116  
:BLT:SWISS 8->280 RF2_MAGSA 2e-94 58.6 %
:PROS 163->179|PS00745|RF_PROK_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21552.1 GT:GENE prfB GT:PRODUCT bacterial peptide chain release factor 2 (RF-2) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 716320..717174 GB:FROM 716320 GB:TO 717174 GB:DIRECTION + GB:GENE prfB GB:PRODUCT bacterial peptide chain release factor 2 (RF-2) GB:PROTEIN_ID AAZ21552.1 GB:DB_XREF GI:71062549 GB:GENE:GENE prfB LENGTH 284 SQ:AASEQ MNELALEEKNQSVINEVLESIKNLKKLAKKNETKCFLSNETDSLDCYIEIHAGAGGTESQDWAEMLRRMYLKWSDIKNFKSELISEHKGEEAGIKSSTIKIEGDYVFGWLKAESGIHRLVRISPFDSGARRHTSFASIWIYPVVDENIEIEINEKDLRIDTYRSSGAGGQHVNTTDSAVRITHLPSKIVVQCQNERSQHKNKDTCMNMLKARLYDFELKKKEQESQTVESSKSEIGWGHQIRSYVLHPYRMVKDNRTNFESSNPDKVLDGEIDDFLESSLYKVK GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 8->280|RF2_MAGSA|2e-94|58.6|273/371| PROS 163->179|PS00745|RF_PROK_I|PDOC00607| SEG 146->154|enieieine| BL:PDB:NREP 1 BL:PDB:REP 15->280|1gqeA|3e-81|57.8|258/354| RP:PDB:NREP 1 RP:PDB:REP 1->280|2b3tB|1e-87|38.0|263/300| RP:PFM:NREP 2 RP:PFM:REP 6->113|PF03462|3e-13|40.7|108/115|PCRF| RP:PFM:REP 155->232|PF00472|5e-18|57.7|78/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 144->256|PF00472|1.1e-43|50.9|112/114|RF-1| HM:PFM:REP 6->113|PF03462|4e-33|36.1|108/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 3->280|1gqeA|5e-91|50.2|277/362|e.38.1.1| HM:SCP:REP 1->284|1gqeA_|2.5e-96|46.6|283/362|e.38.1.1|1/1|Release factor| OP:NHOMO 2196 OP:NHOMOORG 1097 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222322222222112222222222232222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222222222222222322222321122222222122222222222222222222222222222233332332222222222222222222222222222222222221222223222222222222222222122223122222212222222222122333323323-22233333332332323332223322232332232222333331323231222222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222232222 33--221-41--11111111111111111111111111-111111-111111111111111111111111111111111111111111-21111111111111111-1522322233-22124221231BJ2-32421212-222221122123222232111111-122311214254M33323456719B3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 280 STR:RPRED 98.6 SQ:SECSTR HHHHHHHHHHHHHHHHHHHHHTTccccHHHHcccccccccGGGccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEcTTccEEEEEEEEcccccHHHHGGGcEEEEEEEccTTccccccEEEEEEEEccccccTTTccccccccEEEEEcccccccTTTcccccEEEEEEETTTccEEEEEEcccHHHHHHHHHHHHHHHHTTTTTTccHHHHHHHHHHHcccccccEEEEEETTTTTEEEEGGGTEEEccHHHHHHTcTHHHHHHHH#### DISOP:02AL 218-240| PSIPRED ccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEEEccHHHHHHHccccEEEEEEEccccccccEEEEEEEEEEEcccccccccccccccEEEEEEEccccccccccEEccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccHHHHcccHHHHHHHHHHccc //