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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : priA
DDBJ      :priA         probable primosomal protein N
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  808/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.52.3
:651 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   116->247 1gm5A PDBj 2e-13 35.6 %
:BLT:PDB   447->521 1oywA PDBj 6e-05 40.3 %
:RPS:PDB   14->95 2d7hD PDBj 1e-16 29.3 %
:RPS:PDB   107->157 3czpA PDBj 3e-04 15.7 %
:RPS:PDB   134->562 1br2A PDBj 7e-32 9.8 %
:RPS:SCOP  89->299 2eyqA3  c.37.1.19 * 4e-37 27.8 %
:RPS:SCOP  342->467 1dzfA1  c.52.3.1 * 6e-22 9.7 %
:RPS:SCOP  438->526 2eyqA3  c.37.1.19 * 1e-06 23.3 %
:HMM:SCOP  63->354 1z3iX2 c.37.1.19 * 1.2e-34 23.5 %
:HMM:SCOP  382->572 1gkuB2 c.37.1.16 * 6.6e-24 23.3 %
:HMM:PFM   440->514 PF00271 * Helicase_C 3.9e-11 27.0 63/78  
:HMM:PFM   143->281 PF00270 * DEAD 7.4e-12 17.8 129/167  
:HMM:PFM   360->401 PF07282 * Transposase_35 0.00064 22.5 40/69  
:BLT:SWISS 2->650 PRIA_RICBR e-130 39.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21055.1 GT:GENE priA GT:PRODUCT probable primosomal protein N GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(232263..234218) GB:FROM 232263 GB:TO 234218 GB:DIRECTION - GB:GENE priA GB:PRODUCT probable primosomal protein N GB:PROTEIN_ID AAZ21055.1 GB:DB_XREF GI:71062052 GB:GENE:GENE priA LENGTH 651 SQ:AASEQ MKVPILIPNIFNHPFTYNSDLNLKVGDYVAVPFGKSEVTGVVWDDFEKKTNKNFAIKKVLRKLDVPPLKKNTIKFLNWFSEYNMTPKGMALKLLLLSSGAIEKLPIEAYEPFKIDIKENEIKLSKEQKNSLKKMNVLNQKFRVHVLQGTTGSGKTMVYFEALKEIIDKGFQGLILLPEIGLTGQFQNKFIEFFGFKPAVWHSGITKKNKEIIWSGIANDKIKVVIGARSSLFLPFKKLGLIIVDEEHDQSYKQDEGVTYNARDMAISRASFENIPINLITAVPSIETYDNIKKGKYSLSKLDQRYLNASLPKYEIINLNNSKLESQSWIAKETIEKVKFHLEKKDQVLFFLNRRGFSPHVLCKKCFTSYSCPNCSINLVYHKNKQNLLCHYCGYKTLLNRDCSKEGKCDFIFSGPGVERISEEVKKIFPTNETTIFSSDTMNKKSSADVLEKIIDNKIQILIGTQLISKGFHFPSLNCIVVVDIDLSSQGHDLRGAEKNLQLYHQLSGRAGRTGKPATVYFQTYNLDTKMITDITNKDPDIFLDKELEIRRENNLPPFQRFIALIITGNNERELEKEAYKFKSFIESAVDGRVLGPVNAPIFRLKRRFRVRLLIRGRKSLKVQNSLSKVIEKFKFPAGMKLTVDVDPINFN GT:EXON 1|1-651:0| BL:SWS:NREP 1 BL:SWS:REP 2->650|PRIA_RICBR|e-130|39.9|639/648| SEG 601->618|ifrlkrrfrvrllirgrk| BL:PDB:NREP 2 BL:PDB:REP 116->247|1gm5A|2e-13|35.6|132/729| BL:PDB:REP 447->521|1oywA|6e-05|40.3|62/501| RP:PDB:NREP 3 RP:PDB:REP 14->95|2d7hD|1e-16|29.3|82/102| RP:PDB:REP 107->157|3czpA|3e-04|15.7|51/460| RP:PDB:REP 134->562|1br2A|7e-32|9.8|428/673| HM:PFM:NREP 3 HM:PFM:REP 440->514|PF00271|3.9e-11|27.0|63/78|Helicase_C| HM:PFM:REP 143->281|PF00270|7.4e-12|17.8|129/167|DEAD| HM:PFM:REP 360->401|PF07282|0.00064|22.5|40/69|Transposase_35| RP:SCP:NREP 3 RP:SCP:REP 89->299|2eyqA3|4e-37|27.8|198/233|c.37.1.19| RP:SCP:REP 342->467|1dzfA1|6e-22|9.7|124/139|c.52.3.1| RP:SCP:REP 438->526|2eyqA3|1e-06|23.3|86/233|c.37.1.19| HM:SCP:REP 63->354|1z3iX2|1.2e-34|23.5|268/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 382->572|1gkuB2|6.6e-24|23.3|180/248|c.37.1.16|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 900 OP:NHOMOORG 810 OP:PATTERN -------------------------------------------------------------------- 111---1-11--------------------------------------------------------------------1111-2121-112111111--11111111211111111111111111111111111111111111111221111111111111111111111111111211111111-1122211111111111111111111111111111132111111111111111111111111111111121222211111111111121111112221111111111211111112222222222222111222111111121111112111122222111111121111111111121112211121111111111111111111111111111121111111-11111111111111111111111111111111111111111111111111111111121111111111111111112112222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112122111112222111222122222111111111111111111111111111111111-111111--11111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111122211221111111---------------------3112222222111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 587 STR:RPRED 90.2 SQ:SECSTR ccccccccccccccccccTTccccTTcEEEEEEccEEEEEEcccccccccccTTccccccEEcccccccHHHHHHHHHHHHHTTccHHHHHHHHHccccccHHHTTHHHHHHHHHHHHTccHHHHTTccTTcEHHHHHTccEEEEEEccTTccHHHHHHHHHHHHHHHHTTHHHHHHHHHEEcccccTTEEccEEEEEEcTTccEEEEEEEEEcccGGGGTcccTTccccHHHHHHHHHcTTcccTTTcTTcTTcccccccccHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHcEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccccccHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHTTTcTEEEEEcTTHHHHHHccccHHHHHHHHTcccHHHHHHTcccHHHHHHHHHHHTcEEEEEEEEcccccccTTcccHHHHHHHHHHTTHHHHHHHHHHHcccEEEEHHTTccccTTTTcccHHHHHHHHTTcH################################################################ PSIPRED cEEEEccccccccccccccccccccccEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHccccEEEEEcccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccEEEEEcccccEEEEEEcccccEEEccccccHHHEEcccccEEEcccccHHHHHHHHccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccEEEEcHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHccHHHHHHHHHHHHHHccccccEEEEEEEEccccHHHHHHHHHHHHHHcccccccEEEcccccccHHHcccEEEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEcccccc //