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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : prpB
DDBJ      :prpB         hypothetical protein prpB
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  332/915 : Eukaryota  69/199 : Viruses  0/175   --->[See Alignment]
c.1.12
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->291 1oqfA PDBj 2e-49 39.1 %
:RPS:PDB   8->280 3e5bA PDBj 2e-36 21.6 %
:RPS:SCOP  11->290 1mumA  c.1.12.7 * 4e-32 39.6 %
:HMM:SCOP  11->292 1f8mA_ c.1.12.7 * 1.8e-84 36.6 %
:RPS:PFM   84->173 PF00463 * ICL 3e-10 38.9 %
:HMM:PFM   84->181 PF00463 * ICL 2e-11 28.6 98/526  
:HMM:PFM   17->103 PF02548 * Pantoate_transf 0.00087 25.6 86/261  
:HMM:PFM   139->228 PF02811 * PHP 0.00097 25.3 79/175  
:BLT:SWISS 27->298 PRPB2_CORGL 9e-80 53.3 %
:PROS 121->126|PS00161|ISOCITRATE_LYASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21958.1 GT:GENE prpB GT:PRODUCT hypothetical protein prpB GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1109959..1110855 GB:FROM 1109959 GB:TO 1110855 GB:DIRECTION + GB:GENE prpB GB:PRODUCT hypothetical protein prpB GB:PROTEIN_ID AAZ21958.1 GB:DB_XREF GI:71062955 GB:GENE:GENE prpB LENGTH 298 SQ:AASEQ MHFVEKEPSQKRADFVSKLKSNKILRVPGAYNPLTAKLIEEIGYDAVYVSGGVMANDLGFPDIGLTTLQDVSTRSYLISRVTSLPTIVDIDTGFKSCEETIKTFEEFGVSAVHLEDQVERKRCGHLDNKELISTEAMVKKIKECVAAKQDENFKIIARSDAKGVEGIDKMIDRCKAYIDAGAEIIFPEALQDEKDFEKVRKELSCYLLANMTEFGKSKLFNYKELENFGYNIVIYPVTTQRLAMKNVEDGLRDIFVNGHQNNIIDKMQTRKRLYELVEYEKYNSLDEKIYNFSTEGHE GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 27->298|PRPB2_CORGL|9e-80|53.3|272/307| PROS 121->126|PS00161|ISOCITRATE_LYASE|PDOC00145| BL:PDB:NREP 1 BL:PDB:REP 15->291|1oqfA|2e-49|39.1|274/290| RP:PDB:NREP 1 RP:PDB:REP 8->280|3e5bA|2e-36|21.6|264/397| RP:PFM:NREP 1 RP:PFM:REP 84->173|PF00463|3e-10|38.9|90/176|ICL| HM:PFM:NREP 3 HM:PFM:REP 84->181|PF00463|2e-11|28.6|98/526|ICL| HM:PFM:REP 17->103|PF02548|0.00087|25.6|86/261|Pantoate_transf| HM:PFM:REP 139->228|PF02811|0.00097|25.3|79/175|PHP| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF00463|IPR000918| GO:PFM GO:0008152|"GO:metabolic process"|PF00463|IPR000918| RP:SCP:NREP 1 RP:SCP:REP 11->290|1mumA|4e-32|39.6|280/289|c.1.12.7| HM:SCP:REP 11->292|1f8mA_|1.8e-84|36.6|279/427|c.1.12.7|1/1|Phosphoenolpyruvate/pyruvate domain| OP:NHOMO 615 OP:NHOMOORG 426 OP:PATTERN 11----1111111111-12111------1-12-----------------------------111--12 -----1-1222---112-------14-----------1-11211111--111211111----1---1---------------1-----211----------------1-------------------------------------2---1----------1-1----11-1--------------------1-1111111111121112111111111---11--11-1---1----------------------------------------------------------------------------------------------1-------------------1---------------1------------1----------123--122112----------1---1--2--1-1----3---11---1-1--212----1-1111111111-----11-----------------------------1--2--475132223221222222333233-13271313--222--1111-1-2211---1-111111111--1-1-11-----------------1-111-----2--1-----------1--------------11-11-111111222221111121111111---2111------1---1--1111111111-11-111111111111-111---1112-1111111111111111------------------------11111111111-1122---------------11111111112-22223432222232222-----------1-1111111111112111111111111------------------1---------------------------------1------ -----11-------1211134325555---------1111111---21121253-----111------------1--------------241111-------1----121------------------------------------------------------1--------1-1221G111-112321611221221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 97.3 SQ:SECSTR ##cccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHTTcccEEEcHHHHHHHccccccccccTTHHHHHHHHHHHcccccEEEEcTTccccHHHHHHHHHHHTccEEEEEcccccccTTcccccEEccHHHHHHHHHHHHHHHHTcccEEEEEEcTTTccEEcccccTTGGGccTTccccTTccEEccccHHHHHHHHHHHcTTccEEEEccccccHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHccHHHHHHHHHHGGGTccHHHHHHHHHHcc###### DISOP:02AL 1-11, 293-298| PSIPRED ccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEHHHHHHHHccccccccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHccHHEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEcHHHcccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHcccccccHHHcccHHHHHHHcccHHHHHHHHHHccccccccc //