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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : prpD
DDBJ      :prpD         2-methylcitrate dehydratase 2
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  213/915 : Eukaryota  71/199 : Viruses  0/175   --->[See Alignment]
e.44.1
:500 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   77->424 1szqA PDBj 1e-12 27.2 %
:RPS:PDB   91->263 3d6bC PDBj 1e-04 13.0 %
:RPS:SCOP  20->482 1szqA  e.44.1.1 * 1e-75 21.6 %
:HMM:SCOP  17->482 1szqA_ e.44.1.1 * 2.7e-113 32.9 %
:RPS:PFM   20->460 PF03972 * MmgE_PrpD 1e-25 29.5 %
:HMM:PFM   20->479 PF03972 * MmgE_PrpD 1.1e-109 27.6 435/445  
:BLT:SWISS 4->470 PRPD1_CORGL e-169 61.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21957.1 GT:GENE prpD GT:PRODUCT 2-methylcitrate dehydratase 2 GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1108457..1109959 GB:FROM 1108457 GB:TO 1109959 GB:DIRECTION + GB:GENE prpD GB:PRODUCT 2-methylcitrate dehydratase 2 GB:PROTEIN_ID AAZ21957.1 GB:DB_XREF GI:71062954 GB:GENE:GENE prpD LENGTH 500 SQ:AASEQ MISHRVKVYPSKIDLPKKNQLAWKIAEIASDNAKLDKAAIEMVINRIIDNASVAIASLNRKAVISSREMALKHPRKNGANLFGIDSKLKFDCEWAAWSNGTAVRELDFHDTFLAEDYSHPGDNIPPILSVAQQTKKSGLDLLRGIITGYEVQVNLVKGICLHKHKIDHIAHLGPSVAAGLGTMLKLNTETIYQAVQQALHTTVSTRQSRKGEISSWKAYAPAHAGKLAIEAVDRAMRGEGAPSPIYEGEDSVIARILDGKKALYNVPLPKKKESKKAILETYTKEYSAEYQSQALIDIAKKLNKKIPNLNQIKKIDIYTSHHTHYVIGTGANDPQKMDPNASRETLDHSIMYIFAVALEDADWHHVKSYTKQRANRKSTIKIWKSITTFEDKKWTKKYHDPNPKNKSFGARVVVTLNNGKKITEQLDRADAHPYGARPFKRQNYINKFLTLTDGILDKKESARFLKVVQNLKNLKAGELNKLNIQVKRSQIKKNTKQGIF GT:EXON 1|1-500:0| BL:SWS:NREP 1 BL:SWS:REP 4->470|PRPD1_CORGL|e-169|61.5|465/498| BL:PDB:NREP 1 BL:PDB:REP 77->424|1szqA|1e-12|27.2|323/461| RP:PDB:NREP 1 RP:PDB:REP 91->263|3d6bC|1e-04|13.0|161/377| RP:PFM:NREP 1 RP:PFM:REP 20->460|PF03972|1e-25|29.5|417/436|MmgE_PrpD| HM:PFM:NREP 1 HM:PFM:REP 20->479|PF03972|1.1e-109|27.6|435/445|MmgE_PrpD| GO:PFM:NREP 2 GO:PFM GO:0019543|"GO:propionate catabolic process"|PF03972|IPR005656| GO:PFM GO:0047547|"GO:2-methylcitrate dehydratase activity"|PF03972|IPR005656| RP:SCP:NREP 1 RP:SCP:REP 20->482|1szqA|1e-75|21.6|445/473|e.44.1.1| HM:SCP:REP 17->482|1szqA_|2.7e-113|32.9|447/473|e.44.1.1|1/1|2-methylcitrate dehydratase PrpD| OP:NHOMO 323 OP:NHOMOORG 304 OP:PATTERN 11----1111111111-11111---------------------------------------111---- -1---1-13321-111111-1---11111111-----1-11111111--11-211111--11--------------------1--------------------------------------------------------------1---------------------------------------------1-1111111111111111111111111---11---------1---------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----------------------11----------------------1-------111111111-----11-----------------------------1------11111111111222211122222-2211--1-----1----------1111--1------------1---1------------------1-1----------------------1--------------11--1--1-11----------------------1111------1------1111111111-11-1111111111-1-111-----11-1111111111111111-------------------------1111111111-1111----------------------11---11111111-1111-----------------1--------------------------------------------------------------------------------1-- -----11--------11111111111111111111-111111111111111111111111111--11-1-11---111-1---------1311111----111--------------------------------------------1------------------------------1----------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 381 STR:RPRED 76.2 SQ:SECSTR #######################HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHTTTTcHHH####HHHHHHHHHTcEEcTTcccccEEccccccccTTccEEEEEEEEEEEEGGGccTTcccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHTTccccHHHHHHTHHHHHcccccccHHHH#####ccccccccccTTTHHHHHHHHHHHHHHTTccGEEEEEEEEcHHHHHHH#######ccccccccHHHHTTcHHHHHHHHHHcc##ccGGGGcHHHHTcHHHHHHHHTEEEEEcHHHHHHHHc##TTTccccEEEEEEETTcccccc############################################################################ DISOP:02AL 1-3| PSIPRED cccccEEccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHcccHHHccEEEEEEccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHccEEEEcHHHHHHccccccccccccEEEEEEEccccEEEEEEccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccc //