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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pth
DDBJ      :pth          Peptidyl-tRNA hydrolase
Swiss-Prot:PTH_PELUB    RecName: Full=Peptidyl-tRNA hydrolase;         Short=PTH;         EC=3.1.1.29;

Homologs  Archaea  0/68 : Bacteria  902/915 : Eukaryota  86/199 : Viruses  0/175   --->[See Alignment]
c.56.3
:186 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->177 2z2jB PDBj 4e-27 34.7 %
:RPS:SCOP  1->177 2pthA  c.56.3.1 * 2e-50 30.5 %
:HMM:SCOP  1->187 1rybA_ c.56.3.1 * 1.6e-58 44.9 %
:RPS:PFM   3->177 PF01195 * Pept_tRNA_hydro 2e-44 46.3 %
:HMM:PFM   3->183 PF01195 * Pept_tRNA_hydro 8.3e-63 43.6 181/184  
:BLT:SWISS 1->186 PTH_PELUB e-105 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20920.1 GT:GENE pth GT:PRODUCT Peptidyl-tRNA hydrolase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 108851..109411 GB:FROM 108851 GB:TO 109411 GB:DIRECTION + GB:GENE pth GB:PRODUCT Peptidyl-tRNA hydrolase GB:PROTEIN_ID AAZ20920.1 GB:DB_XREF GI:71061917 GB:GENE:GENE pth LENGTH 186 SQ:AASEQ MLLFVGLGNPTPDSENNRHNIGFKLIDALNQKFGLSKQKPKFKGLLTTGNVEDKKVYAIKPLTFMNNSGICIRELIEYFKIDAEDVIVFHDDLDLEFGKVKAKFAGSSAGHNGIESIDKFIGKDYSRVRIGIGRPKTKADVADHVLKDFDEDEMIQLEKITKNIIDSMAILIDKKLDLFSSTVNNK GT:EXON 1|1-186:0| SW:ID PTH_PELUB SW:DE RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; SW:GN Name=pth; OrderedLocusNames=SAR11_0096; SW:KW Complete proteome; Cytoplasm; Hydrolase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->186|PTH_PELUB|e-105|100.0|186/186| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| BL:PDB:NREP 1 BL:PDB:REP 2->177|2z2jB|4e-27|34.7|176/182| RP:PFM:NREP 1 RP:PFM:REP 3->177|PF01195|2e-44|46.3|175/183|Pept_tRNA_hydro| HM:PFM:NREP 1 HM:PFM:REP 3->183|PF01195|8.3e-63|43.6|181/184|Pept_tRNA_hydro| GO:PFM:NREP 2 GO:PFM GO:0004045|"GO:aminoacyl-tRNA hydrolase activity"|PF01195|IPR001328| GO:PFM GO:0006412|"GO:translation"|PF01195|IPR001328| RP:SCP:NREP 1 RP:SCP:REP 1->177|2pthA|2e-50|30.5|177/193|c.56.3.1| HM:SCP:REP 1->187|1rybA_|1.6e-58|44.9|187/191|c.56.3.1|1/1|Peptidyl-tRNA hydrolase-like| OP:NHOMO 1040 OP:NHOMOORG 988 OP:PATTERN -------------------------------------------------------------------- 1111122222221111111-111111111111111111111111-1111111111111111111111111111111111111-11111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111311111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111-1111111111111111111111111-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111-1111111111111111111111111111111111111111111122222221111111111111111-11111111111111111111111111111111 ----11------1121-------------------------------111------111----2211-1111112-1--111111111--11---1-------111-1211-211111----1--1-11141-111------113-1------11-1-2----11--------1-11116111212456-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 176 STR:RPRED 94.6 SQ:SECSTR #EEEEEcccccTTTTTcGGGHHHHHHHHHHHHHTcccEEcTTTccEEEEEETTEEEEEEEccccGGGTHHHHHHHHHHTTccGGGEEEEEEETTccTTcEEEEEcccccccHHHHHHHHHHTcccEEEEEEcccccTTccHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHHHccc######### DISOP:02AL 107-109, 185-186| PSIPRED cEEEEEEcccHHHHHcccccHHHHHHHHHHHHHcccccccccEEEEEEEEEcccEEEEEEccccccccHHHHHHHHHHHcccHHHEEEEEEcccccccEEEEEcccccccccHHHHHHHHHcccccEEEEEEccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccc //