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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ptrB
DDBJ      :ptrB         oligopeptidase B
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  396/915 : Eukaryota  108/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.69.1
:691 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->687 2bklB PDBj 8e-47 26.3 %
:RPS:PDB   152->411 1c5kA PDBj 1e-04 12.5 %
:RPS:PDB   488->686 1e5tA PDBj 3e-26 29.1 %
:RPS:SCOP  4->417 1e5tA1  b.69.7.1 * 2e-17 18.2 %
:RPS:SCOP  421->686 1e5tA2  c.69.1.4 * 4e-62 31.7 %
:HMM:SCOP  1->421 1qfmA1 b.69.7.1 * 4.3e-80 27.7 %
:HMM:SCOP  421->688 1sfrA_ c.69.1.3 * 2.9e-37 27.9 %
:RPS:PFM   9->409 PF02897 * Peptidase_S9_N 2e-56 34.9 %
:RPS:PFM   481->671 PF00326 * Peptidase_S9 3e-16 31.0 %
:HMM:PFM   6->414 PF02897 * Peptidase_S9_N 2.9e-73 32.1 392/415  
:HMM:PFM   472->688 PF00326 * Peptidase_S9 5.6e-61 38.8 209/213  
:BLT:SWISS 3->689 PTRB_ECOLI 5e-98 33.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21001.1 GT:GENE ptrB GT:PRODUCT oligopeptidase B GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 181274..183349 GB:FROM 181274 GB:TO 183349 GB:DIRECTION + GB:GENE ptrB GB:PRODUCT oligopeptidase B GB:PROTEIN_ID AAZ21001.1 GB:DB_XREF GI:71061998 GB:GENE:GENE ptrB LENGTH 691 SQ:AASEQ MKIPHLKKKSEIKTCHNISWEDDYSWIHQDDILEVLKDSKKLNPEVRKYLEEENSYTDFHLSDTKTIQKKLFDEIKGRIKLDDESLPFKDFDYEYWSKTTTKGNYSIKLRKKIGTNNIEEIWNGDEEKEKLKVEYFGVGDLEVSFNDKYLGYSLDTKGSEYYTIYIRDINTKKLVTEKIEETSGSITFSLDDQYVFYSKLDENHRPRKIYRHKLGTKVSEDQLIFEEKSEAFTVGIGLSADDKYFFINSSDHNTSEQYYFDVNEKDPKPKLIKKRQRGILYSVNSWDGKFYNHTNENAEDFKIDISNSLEKPDWKTFIAAKDEVLIGGLTFLKNWIIRSETSDALDKLFVKNITTGIEEELIFSDETVYVPGASLMQRDKNTDEIYISYSSPKTQSRVYSYNLSTKEKKLVKEQEIPSGHNPDDYIVERVDCKSHDGRLVPLTITRHKNTKMDGSAQLLLYGYGSYGSSMSPSFSTTRLSLINRDIIWVTAHIRGGMERGMKWWKEGKLLNKKNTFEDYIASAKYLIENKYTSKNQIIGMGGSAGGLLMGAVVNQAPELFLGIIMAVPFVDSLTTNLDHSLPLTVGEFDEFGNAKDKKDHFDYIYSYAPYNNIKKMDYPHMLITTSLSDNRVLFDEPAKFTAKLREYKTDNNLLLLKTEMNAGHGGKSGRDGAIEEIALDYAFALKISKKI GT:EXON 1|1-691:0| BL:SWS:NREP 1 BL:SWS:REP 3->689|PTRB_ECOLI|5e-98|33.0|672/686| SEG 458->469|lllygygsygss| SEG 537->553|iigmggsaggllmgavv| BL:PDB:NREP 1 BL:PDB:REP 4->687|2bklB|8e-47|26.3|642/677| RP:PDB:NREP 2 RP:PDB:REP 152->411|1c5kA|1e-04|12.5|240/397| RP:PDB:REP 488->686|1e5tA|3e-26|29.1|199/710| RP:PFM:NREP 2 RP:PFM:REP 9->409|PF02897|2e-56|34.9|384/396|Peptidase_S9_N| RP:PFM:REP 481->671|PF00326|3e-16|31.0|184/208|Peptidase_S9| HM:PFM:NREP 2 HM:PFM:REP 6->414|PF02897|2.9e-73|32.1|392/415|Peptidase_S9_N| HM:PFM:REP 472->688|PF00326|5.6e-61|38.8|209/213|Peptidase_S9| GO:PFM:NREP 4 GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF02897|IPR004106| GO:PFM GO:0006508|"GO:proteolysis"|PF02897|IPR004106| GO:PFM GO:0006508|"GO:proteolysis"|PF00326|IPR001375| GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF00326|IPR001375| RP:SCP:NREP 2 RP:SCP:REP 4->417|1e5tA1|2e-17|18.2|395/430|b.69.7.1| RP:SCP:REP 421->686|1e5tA2|4e-62|31.7|262/280|c.69.1.4| HM:SCP:REP 1->421|1qfmA1|4.3e-80|27.7|401/430|b.69.7.1|1/1|Peptidase/esterase 'gauge' domain| HM:SCP:REP 421->688|1sfrA_|2.9e-37|27.9|258/0|c.69.1.3|1/1|alpha/beta-Hydrolases| OP:NHOMO 889 OP:NHOMOORG 512 OP:PATTERN ---------------1--------------------------------------1111111------- 3321111222211121222-221122322321222222221--112311221222111-1111-1-1--111111111---------------------3231232-2-1---------------11-11111-1111111-----111111-11-----------42211------------1-1-----1---------------------------------------------------------------------------------------------1---111---11------------------------------------------------------------------1---------1-13334111111122111-1111111111111111-11111111131-21112242221111232------------------1113--2-----------1111121111-2112----1232221----11111111111--1-1111-1111---------1--------1--------2-1111111------2---------------------------42-----------------------------3312--331313233311233332334332--1-11-------11111111112111111-11111111111111111111111111111111111111111113--111111-111111111111---3------------1--------------------------1-11111111111111111-----------221111114422222222222221111------------------2--------------------------------------1- ----224-634-556--1----------------------------------1------------------------------------111-111----111111-1944363342212122134272BE41433213261222221212225122221121-11-211---22-332E111458587-552243533 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 678 STR:RPRED 98.1 SQ:SECSTR ###ccccccccEEEETTEEEEcTTGGGGcTT####GGcTTc#cHHHHHHHHHHHHHHHHHHHTcTT#HHHHHHHHHHHHcccEEcccEEETTEEEEEEEcTTccccEEEEEEcTTcccEEEEcTTTGGGccccccEEEEEEEEcTTccEEEEEEEETTccccEEEEEETTTccccccccccccTccEEcTTccEEEEEcGGGGGGGcEEEEEETTccGGGcEEEEcccccTTcEEEEEEcTTcccEEEEEEETTTEEEEEEEcTTccccEEEEEcccccEEEEEETTEEEEEcTTcccEEEEEETTccccEEccEcccccETTEEccccEEcTTcccEEEEcccccEEEEEETTccEEEEEcccccEEEETTEEEEcEEETTEEEEEEccccccGGGTTcccccccccccEEEccccccccccTTTHHHHccccccccccccEEEEEEEccccccEEEEEEEcccTTTcccTTcGGGccHHHHHccEEEEEccTTccTTHHHHHHTTcGGGTHHHHHHHHHHHHHHHHTTcccGGGEEEEEETHHHHHHHHHHHHcGGGccEEEEEcccccTTTGGGcTTGGGGHHHHccTTcHHHHHHHHHHcGGGcccccccTccccEEEEEEETTcccccTHHHHHHHHHHHHHTTccccEEEEEEccccccTTccHHHHHHHHHHHHHHHHHH#### DISOP:02AL 691-692| PSIPRED ccccccccccEEEEEccEEEEcccHHHcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccEEEccEEEEEEEccccEEEEEEEEEccccccEEEEccccccccccccEEEEEEEEEcccccEEEEEEccccccEEEEEEEEcccccccccccccccEEEEEEccccEEEEEEEccccccEEEEEEEccccccccEEEEEcccccEEEEEEEcccccEEEEEEEccccccEEEEEcccccccEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccEEEEccccccEEEEEEEEccEEEEEEEcccEEEEEEEEcccccEEEEEcccccEEEEEEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEEEccccccccHHHccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEcccccccccccccHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHEEEEEEcHHHHHHHHHHHcccccEEEEEEEccccccHHccccccccccHHHHHHcccccccHHHHHHHHHHcHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccc //