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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : racX
DDBJ      :racX         Aspartate racemase
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  109/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.78.2
:248 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->216 1jflA PDBj 1e-23 35.0 %
:RPS:PDB   1->107 2dx7A PDBj 2e-11 38.5 %
:RPS:PDB   78->215 2dgdA PDBj 1e-09 11.5 %
:RPS:SCOP  1->107 1jflA1  c.78.2.1 * 2e-10 38.5 %
:RPS:SCOP  130->216 1iu9A  c.78.2.1 * 1e-09 32.2 %
:HMM:SCOP  1->129 1jflA1 c.78.2.1 * 1.2e-28 37.2 %
:HMM:SCOP  119->228 1iu9A_ c.78.2.1 * 1.6e-24 34.5 %
:RPS:PFM   62->223 PF01177 * Asp_Glu_race 2e-11 28.0 %
:HMM:PFM   5->243 PF01177 * Asp_Glu_race 1.7e-56 31.7 208/217  
:BLT:SWISS 4->214 RACD_ENTFC 3e-17 32.5 %
:PROS 93->101|PS00923|ASP_GLU_RACEMASE_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22081.1 GT:GENE racX GT:PRODUCT Aspartate racemase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1211265..1212011 GB:FROM 1211265 GB:TO 1212011 GB:DIRECTION + GB:GENE racX GB:PRODUCT Aspartate racemase GB:NOTE similar to Swiss-Prot Accession Number P29079 GB:PROTEIN_ID AAZ22081.1 GB:DB_XREF GI:71063078 GB:GENE:GENE racX LENGTH 248 SQ:AASEQ MIGILGGMGTQAGLDFCNKLAMLNRGKSDQEYPLFMLYNKSNIPGRPESIGVQTKSLSTIPRNSKNTKKYNRVLKSLLDGCKSLEKSGCKFIVIPCNTAHYWYEDLRKKIKIPIINMPKEVFIQTKKSCKKNSKIGLLATEGTLKTEIYDKIFKKDYVLIKPLSNLQTSSVNKTIKHVKMGNIKLAEKTIKPAIKYLIKQKCKKIILGCTEIPIAIFAYKSLQNAKVSKLYLDPNLILANSCMAKYKK GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 4->214|RACD_ENTFC|3e-17|32.5|191/243| PROS 93->101|PS00923|ASP_GLU_RACEMASE_1|PDOC00714| SEG 108->119|kkikipiinmpk| BL:PDB:NREP 1 BL:PDB:REP 2->216|1jflA|1e-23|35.0|197/228| RP:PDB:NREP 2 RP:PDB:REP 1->107|2dx7A|2e-11|38.5|91/228| RP:PDB:REP 78->215|2dgdA|1e-09|11.5|130/217| RP:PFM:NREP 1 RP:PFM:REP 62->223|PF01177|2e-11|28.0|157/211|Asp_Glu_race| HM:PFM:NREP 1 HM:PFM:REP 5->243|PF01177|1.7e-56|31.7|208/217|Asp_Glu_race| RP:SCP:NREP 2 RP:SCP:REP 1->107|1jflA1|2e-10|38.5|91/115|c.78.2.1| RP:SCP:REP 130->216|1iu9A|1e-09|32.2|87/111|c.78.2.1| HM:SCP:REP 1->129|1jflA1|1.2e-28|37.2|113/0|c.78.2.1|1/2|Aspartate/glutamate racemase| HM:SCP:REP 119->228|1iu9A_|1.6e-24|34.5|110/0|c.78.2.1|2/2|Aspartate/glutamate racemase| OP:NHOMO 132 OP:NHOMOORG 117 OP:PATTERN ------------------------------------------------------21211111------ -------------------------------------1----------------------------1----1-----------------------------1-------------------------------------------1-------------------------------------1---------111111121-1111111---11111---1----------2---------------------1111111111-11111111--1111---------------------------------------------11---------------------1---------------1----1-1--------------------------------------------1------------------------------------------------------------------------------1-----122112----2-------23--------1-11-------------2111------------------------1-----1------------------------11-1-----------------------------------------------------------------1-211-----------------1-----------------22---1111111111111111-------------------------------------------------------------1--------------------------------1111------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 240 STR:RPRED 96.8 SQ:SECSTR cEEEEEcccHHHHHHHHHHHHHTcccccGGGcccEEEEEcTTcccHHHHHTTccccccTcccccccTTcccccHHHHHHHHHHHHHHTccEEEcccTGGGGGHHHHHHHHcTTcccHHHHHHHHHHHHHTTccEEEEEEcccHHHHHHHHHHHHTTTcEEEEEEEEEEcEEcccccHHHHHTccHHHHHHHHHTTHHHHTTccEEEEccTTcccTHHHHHHHHcTTcE##EEEHHHHHHHHH###### PSIPRED cEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEcccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHc //