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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : recA
DDBJ      :recA         recA protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  894/915 : Eukaryota  14/199 : Viruses  5/175   --->[See Alignment]
c.37.1d.48.1
:358 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   3->316 3cmxA PDBj e-125 70.4 %
:RPS:PDB   2->346 3cmxA PDBj 2e-64 61.9 %
:RPS:SCOP  1->259 1g18A1  c.37.1.11 * 4e-45 64.9 %
:RPS:SCOP  260->319 1g18A2  d.48.1.1 * 7e-17 46.7 %
:HMM:SCOP  1->259 1g19A1 c.37.1.11 * 2.2e-76 33.6 %
:HMM:SCOP  260->319 1u94A2 d.48.1.1 * 1.4e-22 63.3 %
:RPS:PFM   13->284 PF00154 * RecA e-113 74.3 %
:HMM:PFM   1->318 PF00154 * RecA 1.2e-172 73.9 318/323  
:BLT:SWISS 1->324 RECA_BRUSU e-138 72.8 %
:PROS 205->213|PS00321|RECA_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21461.1 GT:GENE recA GT:PRODUCT recA protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 625897..626973 GB:FROM 625897 GB:TO 626973 GB:DIRECTION + GB:GENE recA GB:PRODUCT recA protein GB:PROTEIN_ID AAZ21461.1 GB:DB_XREF GI:71062458 GB:GENE:GENE recA LENGTH 358 SQ:AASEQ MDAAMSQIIDNFGKGSVMKLGQRRAMDVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTPPSKKN GT:EXON 1|1-358:0| BL:SWS:NREP 1 BL:SWS:REP 1->324|RECA_BRUSU|e-138|72.8|324/361| PROS 205->213|PS00321|RECA_1|PDOC00131| SEG 128->137|sisvividsv| BL:PDB:NREP 1 BL:PDB:REP 3->316|3cmxA|e-125|70.4|314/1603| RP:PDB:NREP 1 RP:PDB:REP 2->346|3cmxA|2e-64|61.9|341/1603| RP:PFM:NREP 1 RP:PFM:REP 13->284|PF00154|e-113|74.3|272/274|RecA| HM:PFM:NREP 1 HM:PFM:REP 1->318|PF00154|1.2e-172|73.9|318/323|RecA| GO:PFM:NREP 3 GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00154|IPR013765| GO:PFM GO:0005524|"GO:ATP binding"|PF00154|IPR013765| GO:PFM GO:0006281|"GO:DNA repair"|PF00154|IPR013765| RP:SCP:NREP 2 RP:SCP:REP 1->259|1g18A1|4e-45|64.9|242/250|c.37.1.11| RP:SCP:REP 260->319|1g18A2|7e-17|46.7|60/60|d.48.1.1| HM:SCP:REP 1->259|1g19A1|2.2e-76|33.6|259/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 260->319|1u94A2|1.4e-22|63.3|60/0|d.48.1.1|1/1|RecA protein, C-terminal domain| OP:NHOMO 978 OP:NHOMOORG 915 OP:PATTERN --1------------------------------1---------------------------------- 3221111111111111111-11111111111111111111111311111111111111111111111111111111111111111111111111111--111111111111111111111111111111111111111111111117111111111111111111111111111111111111311111111111-122112112211211111121121111111111111111111111111111111111111122111111111221111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111121111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222232111111111111111111111111111111111111111111111111111111111111111111------11111111111111111-11-11111111111111111111111111111111111211111111111111122212222111--11111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111--11111111111111-1111--311-11111111111111111111111111111111 ----1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-31-1---336-4----211- -----1-1------1------------------------1------------------------------------------------------1-------------------------------------------------------------------------------- DISOP:02AL 19-27, 146-158, 321-358| PSIPRED cHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccHHHEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccccccccccccccEEEEEEEEEEEEEEccccHHHHHccccEEEEEEEEccccccccEEEEEEEccccccccHHHHHHHHHcccEEccccEEEEcccEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccHHHcccccccc //