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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : recG
DDBJ      :recG         ATP-dependent DNA helicase recG
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.37.1
:683 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->638 1gm5A PDBj 8e-98 37.1 %
:RPS:PDB   62->137 3dm3A PDBj 9e-04 16.4 %
:RPS:PDB   252->368 2dxcE PDBj 1e-15 6.0 %
:RPS:PDB   360->547 3bbeA PDBj 1e-28 9.6 %
:RPS:SCOP  14->175 1gm5A2  b.40.4.9 * 2e-18 21.6 %
:RPS:SCOP  176->442 1gm5A3  c.37.1.19 * 5e-56 37.9 %
:RPS:SCOP  442->630 2eyqA5  c.37.1.19 * 5e-49 41.1 %
:HMM:SCOP  3->179 1gm5A2 b.40.4.9 * 3.3e-26 30.3 %
:HMM:SCOP  179->442 1gm5A3 c.37.1.19 * 2.1e-58 30.5 %
:HMM:SCOP  441->654 2eyqA5 c.37.1.19 * 6.4e-44 31.7 %
:RPS:PFM   287->425 PF00270 * DEAD 7e-05 30.6 %
:RPS:PFM   507->575 PF00271 * Helicase_C 6e-09 36.8 %
:HMM:PFM   507->576 PF00271 * Helicase_C 2.3e-18 40.6 69/78  
:HMM:PFM   284->423 PF00270 * DEAD 5e-18 21.1 133/167  
:HMM:PFM   90->134 PF01336 * tRNA_anti 3.8e-07 20.0 45/76  
:HMM:PFM   13->31 PF11798 * IMS_HHH 0.00051 31.6 19/33  
:BLT:SWISS 8->648 RECG_AQUAE e-105 38.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21800.1 GT:GENE recG GT:PRODUCT ATP-dependent DNA helicase recG GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(972986..975037) GB:FROM 972986 GB:TO 975037 GB:DIRECTION - GB:GENE recG GB:PRODUCT ATP-dependent DNA helicase recG GB:PROTEIN_ID AAZ21800.1 GB:DB_XREF GI:71062797 GB:GENE:GENE recG LENGTH 683 SQ:AASEQ MKNKNNYDYLLADLTKLNGVGKKTMEILKKKKVNNIFDLLWRLPKSYTDRTLVSKICDLQIGVIQTIRIVPLKYQFPRVRNLPNRVNCIDETGKIDCIFFNSHEGYVRKILPLNEEVTISGKIGNYKGRYQITNPTYISQDSSLIENIDNKYSLTEGITEKTYNKIINQILKNLPILPEWHDKDILKIFNNESWNESIIKLHDPKNIENYKSDFYKRLAYDEILASFLVNSEIRKKIKKIKKISKNFSEKAHKNIVNKLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSGKTIVALISSLNVINSGFQVALMAPTEILARQHYTLAKKLFPKDIKIELLSSKSENSEKKRIIKNLENNEIQMVFGTHAIFQKKIIFANLGYIIIDEQHKFGVRQRKLLSDKGGDNCDVLLMSATPIPRTLTMSVYGDMDVSIIKEKPSNRKEVKTYSKLESKIDDVINFVKKEIKEGNQIFWVCPLIEESKKLDHQSSVTKYKFLNEIFPNKVALLHGKIANEEKEEILNKFLNKKYSILVSTTIIEVGIDFPNANVIIIENANKFGLSQLHQLRGRVGRGTKQASCILMFKSNLSVNAKKRINILKNSNDGFEISEEDMKLRGFGDLLGFKQSGIKNFRLADPIQNEDLFLMAEKQIKKIELENTDIKKYKALLKLYDQADIINDMV GT:EXON 1|1-683:0| BL:SWS:NREP 1 BL:SWS:REP 8->648|RECG_AQUAE|e-105|38.8|640/792| SEG 233->245|irkkikkikkisk| SEG 340->358|kiellssksensekkriik| BL:PDB:NREP 1 BL:PDB:REP 10->638|1gm5A|8e-98|37.1|606/729| RP:PDB:NREP 3 RP:PDB:REP 62->137|3dm3A|9e-04|16.4|73/98| RP:PDB:REP 252->368|2dxcE|1e-15|6.0|116/151| RP:PDB:REP 360->547|3bbeA|1e-28|9.6|188/204| RP:PFM:NREP 2 RP:PFM:REP 287->425|PF00270|7e-05|30.6|134/167|DEAD| RP:PFM:REP 507->575|PF00271|6e-09|36.8|68/76|Helicase_C| HM:PFM:NREP 4 HM:PFM:REP 507->576|PF00271|2.3e-18|40.6|69/78|Helicase_C| HM:PFM:REP 284->423|PF00270|5e-18|21.1|133/167|DEAD| HM:PFM:REP 90->134|PF01336|3.8e-07|20.0|45/76|tRNA_anti| HM:PFM:REP 13->31|PF11798|0.00051|31.6|19/33|IMS_HHH| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 3 RP:SCP:REP 14->175|1gm5A2|2e-18|21.6|162/180|b.40.4.9| RP:SCP:REP 176->442|1gm5A3|5e-56|37.9|256/259|c.37.1.19| RP:SCP:REP 442->630|2eyqA5|5e-49|41.1|180/211|c.37.1.19| HM:SCP:REP 3->179|1gm5A2|3.3e-26|30.3|175/0|b.40.4.9|1/1|Nucleic acid-binding proteins| HM:SCP:REP 179->442|1gm5A3|2.1e-58|30.5|262/264|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 441->654|2eyqA5|6.4e-44|31.7|205/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1770 OP:NHOMOORG 901 OP:PATTERN -------------------------------------------------------------------- 2222222222222221222-22222222222222222222222222222222222222222222222222221222222221211222222232222--2222222222211111111111111122232222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222232222222222222222222222222222222222222222222222222232222222222222222223222222223222222222222122222121222222222222222222222223332222222222222222222-33333333222222222222322222222222223322222222222222222222222222211--2212222222222111112222222222222222222222222222222232222222222232222222232222222222222222222322211111111111111222222222222221111222322222222222222222222222222222222222222222322222222221-22222-1111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222--22222222222222222222222222222222222322222222222222222222222222222222222222222222223222222222222222221222222222222222222---1---------------------2222222222211 -1---------------------------------------------------------------------------------1-------------------------------------------------------------------------------1---------1-1-12A2221-1223-221-1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 668 STR:RPRED 97.8 SQ:SECSTR #########ccccccccccccHHHHHHHHTTTccccGGGTcccccEEEcccccccccccccEEEEEEEEEEEEEcTTccEEEEEEEEEEETTEEEEEEEEGGGccTGGccccTTcEEEEEEEEEcTTccEEEEEEEcTTccccccccccGGGcccTTcccEEEETTEEEEEcTTTccEHHTTccccccccccHHHHHHHHHHHHHHHHHHTHHHHTTccHHHHHTHHHHHHHHHHTTccGGGcHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTTTccTHcccHHHHHHTccccccccccccccccccccTETcEEEccGGGccccHHHHHHHHHHHHHHHHccccccccccccEEEEccccccGGGGGGccccTTcccccccHHHHTGGGTTcGcccHHHHHHHHHHHHTcHHHHTTcEEEEEEETTcEEEEEcTTcccccHHHHHHHHTTcccTTEEEEccHHHHHHHTTccEEEEEEEEEEEccGGGGGGccEEEEEcccccccccGGGcccEEEEEEcccccccHHHHHHHHHHHHHcccTTHHHHHHHHHTTccccHHHHTTHHHHHHHHHHTTccEEEEcccccTccGGGcccEEEEEEEHHHHccccHHHTccccHHHHHHHHHHHHHHHcTTcccccccHHHHHccHHHHHTTccTTHHHHTTc###### DISOP:02AL 1-4, 139-142, 240-241| PSIPRED cccccccccccccHHHcccccHHHHHHHHHcccccHHHHHHHccccEEcccccccHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEcccHHHHHHHcccccEEEEEEEEEEEccEEEEEccEEEEccccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHccccHHHccEEEEEcHHccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHcccccEEEcccccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcEEEEccccccccEEEEEccccccHHHEEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHcccccc //