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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : recJ
DDBJ      :recJ         single-stranded-DNA-specific exonuclease RecJ
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  780/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.107.1
:564 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   80->433 1ir6A PDBj 7e-22 25.1 %
:RPS:PDB   31->107 2b0tA PDBj 5e-06 13.9 %
:RPS:PDB   80->436 3dmaA PDBj 3e-26 15.7 %
:RPS:SCOP  63->438 1ir6A  c.107.1.2 * 3e-40 22.7 %
:HMM:SCOP  55->452 1ir6A_ c.107.1.2 * 1.6e-80 33.2 %
:HMM:PFM   76->221 PF01368 * DHH 2e-17 26.0 104/117  
:HMM:PFM   372->436 PF02272 * DHHA1 4e-12 26.6 64/68  
:BLT:SWISS 5->561 RECJ_BACSU 2e-49 28.4 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21817.1 GT:GENE recJ GT:PRODUCT single-stranded-DNA-specific exonuclease RecJ GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 988522..990216 GB:FROM 988522 GB:TO 990216 GB:DIRECTION + GB:GENE recJ GB:PRODUCT single-stranded-DNA-specific exonuclease RecJ GB:PROTEIN_ID AAZ21817.1 GB:DB_XREF GI:71062814 GB:GENE:GENE recJ LENGTH 564 SQ:AASEQ MISVSGKKWEQKKINQNIVDKLKQEHDFSEILSRLIISRKFDNDEIATINTDLDLNNVFLNNKDFSQSINLVVNSINNNEKICILGDYDVDGSAATSLFVKFFEDINHPFFYYIPDREKDGYGATKKLFQKLILEKPKLIIMVDCGSTSNEAIDFLNENEIKSLIIDHHEINKPFPNANSIINPKKDNSYKEYDYLCATTLTYFFLDLLIKKIKTKINISDYLIYVLLATVCDVMPLRKLNRLIALNALKNFDITKNLPLSTLFDLNEKKNKININDLGYLIGPILNAGGRLGKSQYATELLSSNNDQVIKDRSTYLIKLNNKRKEIENLLLNEIDFKKIEKENKEVIIYYNPNINEGLIGIIAARLKDYFNKPSIVITASNELLKGSARSVYNYNIGRIIKNLLDKDIIINGGGHNMAAGFTLNKANLKDFENYILEDFLKSNTVNNNIFSYESEVSPLAFNQDFYDDIKKLEPFGTGNSVPTFMLRDLKIIKPIVLNNKHISVILKSKTGFSIKSISFNTINTMIGEHLMSYKNNINVIGQIGENIWNNKKTLQLTIRDLIL GT:EXON 1|1-564:0| BL:SWS:NREP 1 BL:SWS:REP 5->561|RECJ_BACSU|2e-49|28.4|543/786| COIL:NAA 11 COIL:NSEG 1 COIL:REGION 320->330| TM:NTM 2 TM:REGION 194->210| TM:REGION 216->237| SEG 68->79|sinlvvnsinnn| SEG 210->219|ikkiktkini| SEG 338->349|kkiekenkevii| SEG 400->412|iiknlldkdiiin| BL:PDB:NREP 1 BL:PDB:REP 80->433|1ir6A|7e-22|25.1|339/385| RP:PDB:NREP 2 RP:PDB:REP 31->107|2b0tA|5e-06|13.9|72/735| RP:PDB:REP 80->436|3dmaA|3e-26|15.7|287/329| HM:PFM:NREP 2 HM:PFM:REP 76->221|PF01368|2e-17|26.0|104/117|DHH| HM:PFM:REP 372->436|PF02272|4e-12|26.6|64/68|DHHA1| RP:SCP:NREP 1 RP:SCP:REP 63->438|1ir6A|3e-40|22.7|357/385|c.107.1.2| HM:SCP:REP 55->452|1ir6A_|1.6e-80|33.2|382/0|c.107.1.2|1/1|DHH phosphoesterases| OP:NHOMO 820 OP:NHOMOORG 783 OP:PATTERN -------------------------------------------------------------------- 111---------------------------------------------------------------------------11111111111111-1111--111111111111111111111111111111111111111111111112222222221111111121212222--11-----11-1111111-111111111311113112111111111121111111111111111111111111111111111111111111111--111111111111111111111111111111111111111111111111111111111121222222212111112111122111111111111111111121-22111111111111111111111111111111111111-11112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-11111------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111--11111111111-11111111111111-1111111111111111111111111111111111111111111111111111111111111111111----11111111111111111111--------------------------1111111111-11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----1----------1------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 405 STR:RPRED 71.8 SQ:SECSTR ##############################HHHHHHHHH#####HHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHTccEEEEEEcccHHHHHHHHHHHHHHHHTccEEEEEEcccccGGGTTTTGGGcEETTTHccEEEEEccccGGGGTTHHHHHHcccEEEEEccccccccccEcEEEcTTcccHHHHHHHcHHHHHHHHHHHTcccccHGGGccHHHHHHHHHHHHTTTTTccHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHGGGGcccHHHHHHHHHHHTTTcEEcHHHHHHHHHccccHHHHHHHHHHHTEEETTTTEEEEEEcHHHTTEEEEEEEEcHHHHHTTccTTTTTTGGGGGGGcTTccEEEEEEEcccEEEEEEEcccccHHHHHHHHTHHHHHTccEEcccEEEEEEcHHHHHHHHHHHTccc############################################################################################################################ DISOP:02AL 1-4, 339-340| PSIPRED cccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHHcccEEEEEccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHccHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccccccHHHHHHHHHccccEEccccccHHcccEEcHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHccHHHHHHHHHHccccccccccEEEcccEEEEEEEEEcccEEEEEEEcccccEEEEEEEccccccccHHHHccccEEEEEEEEEEHHcccccccEEEEEEEcc //