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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : recR
DDBJ      :recR         recR-like protein
Swiss-Prot:RECR_PELUB   RecName: Full=Recombination protein recR;

Homologs  Archaea  0/68 : Bacteria  870/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
e.49.1
:203 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->195 1vddC PDBj 2e-23 34.9 %
:RPS:PDB   60->196 1cy6A PDBj 5e-17 11.0 %
:RPS:SCOP  18->195 1vddA  e.49.1.1 * 1e-24 34.9 %
:HMM:SCOP  1->201 1vddA_ e.49.1.1 * 2.3e-60 41.4 %
:HMM:PFM   82->166 PF01751 * Toprim 4.1e-10 20.0 85/96  
:HMM:PFM   39->76 PF02132 * RecR 2e-06 24.3 37/41  
:HMM:PFM   11->29 PF00633 * HHH 0.00035 42.1 19/30  
:BLT:SWISS 18->203 RECR_PELUB 4e-97 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21331.1 GT:GENE recR GT:PRODUCT recR-like protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 495664..496275 GB:FROM 495664 GB:TO 496275 GB:DIRECTION + GB:GENE recR GB:PRODUCT recR-like protein GB:PROTEIN_ID AAZ21331.1 GB:DB_XREF GI:71062328 GB:GENE:GENE recR LENGTH 203 SQ:AASEQ MQNINEIEELIKLISKLPGLGPKSAKRIVLKLINNRDELVKPMANTLAQVYKNVIRCQSCGTLKSNSLGCNNCENSKEKYNKICVVEDIADQWSIENSNIYKGYFHILGGTISSAGQRKEDLLINSLVERVSRENIEEVILATSATVEGQTTAYYIEDSLKKTSTKVTKLAQGLPVGGEIESLDDGTLYSAFKNRTGIKTNSD GT:EXON 1|1-203:0| SW:ID RECR_PELUB SW:DE RecName: Full=Recombination protein recR; SW:GN Name=recR; OrderedLocusNames=SAR11_0509; SW:KW Complete proteome; DNA damage; DNA recombination; DNA repair;Metal-binding; Zinc; Zinc-finger. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 18->203|RECR_PELUB|4e-97|100.0|186/203| GO:SWS:NREP 4 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| SEG 3->17|nineieelikliskl| SEG 159->170|slkktstkvtkl| BL:PDB:NREP 1 BL:PDB:REP 18->195|1vddC|2e-23|34.9|175/196| RP:PDB:NREP 1 RP:PDB:REP 60->196|1cy6A|5e-17|11.0|136/562| HM:PFM:NREP 3 HM:PFM:REP 82->166|PF01751|4.1e-10|20.0|85/96|Toprim| HM:PFM:REP 39->76|PF02132|2e-06|24.3|37/41|RecR| HM:PFM:REP 11->29|PF00633|0.00035|42.1|19/30|HHH| RP:SCP:NREP 1 RP:SCP:REP 18->195|1vddA|1e-24|34.9|175/199|e.49.1.1| HM:SCP:REP 1->201|1vddA_|2.3e-60|41.4|198/199|e.49.1.1|1/1|Recombination protein RecR| OP:NHOMO 873 OP:NHOMOORG 872 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--11111111-1111-111111111111111111111111111111111-111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111-11111111111111111111111111111111111111-111111111111--11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--11111111---1-111111---11-1-1111-111111-11111----------111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 182 STR:RPRED 89.7 SQ:SECSTR #################TTccHHHHHHHTTTTcccHHHHHHTGGGccHHHHHHHHTTTGEEEccEHHHHHHHGGGccTTEEEEEcccccEEccccccHHHHHHHTEETTTTTEEccEEcTTcHHHHHHHHHHHHTEEEEEEcccccHHHHHHHHHHHHHHcccGGGEEEcccccccHHHHHccccHHHHHHHHHHHHHH#### DISOP:02AL 1-4, 199-203| PSIPRED cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHccccccEEEEEccEEcccccccccccHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHcccccccccc //