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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ribA
DDBJ      :ribA         GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  780/915 : Eukaryota  122/199 : Viruses  0/175   --->[See Alignment]
c.144.1d.115.1
:366 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->202 1iezA PDBj 2e-43 40.1 %
:RPS:PDB   225->364 2bz0B PDBj 4e-05 17.9 %
:RPS:SCOP  6->202 1g57A  d.115.1.2 * 4e-72 39.4 %
:RPS:SCOP  225->366 2bz0A1  c.144.1.1 * 1e-17 20.9 %
:HMM:SCOP  6->209 1k4iA_ d.115.1.2 * 1e-78 54.9 %
:HMM:SCOP  207->366 2bz1A1 c.144.1.1 * 2e-19 24.4 %
:RPS:PFM   9->202 PF00926 * DHBP_synthase 1e-49 51.0 %
:RPS:PFM   223->363 PF00925 * GTP_cyclohydro2 2e-11 30.4 %
:HMM:PFM   9->202 PF00926 * DHBP_synthase 1.4e-77 51.0 194/194  
:HMM:PFM   215->363 PF00925 * GTP_cyclohydro2 5.3e-22 24.8 149/169  
:BLT:SWISS 6->363 RIBBA_AQUAE 1e-63 41.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21850.1 GT:GENE ribA GT:PRODUCT GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1015501..1016601) GB:FROM 1015501 GB:TO 1016601 GB:DIRECTION - GB:GENE ribA GB:PRODUCT GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase GB:PROTEIN_ID AAZ21850.1 GB:DB_XREF GI:71062847 GB:GENE:GENE ribA LENGTH 366 SQ:AASEQ MKKNNYASIESIINIAKKGGMFILVDDEKRENEGDLIISTTDSSAKNINFMAKYGRGLICLALDSVQAKRLNLSLMSPINQSRNKTAFTISIEAKKGITTGISAKDRAKTIKIASKKNANKKDIVSPGHVFPIIAKDGGVLVRAGHTEASVDISKLAKKNNSAVICEIMNEDGTMAKGQDLFDFANKHNLKIGKIEDLIAYRLKKEKLIKLKKQSDIKVKNQKYKIRIYENLLDGSEHFALIKGNIKKGIIPRVRVISSNVVQNYLINQQLPNSFDKTLNYFKKFNNCVLVFIKDTNLKSVTQTLKDYKNKNFYKKGNDKLIRNYGIGAQIIKDLKIKNMILITKSLKKVIGLEGYDIKITKQEII GT:EXON 1|1-366:0| BL:SWS:NREP 1 BL:SWS:REP 6->363|RIBBA_AQUAE|1e-63|41.0|356/406| SEG 108->122|aktikiaskknankk| SEG 203->213|lkkekliklkk| BL:PDB:NREP 1 BL:PDB:REP 6->202|1iezA|2e-43|40.1|197/217| RP:PDB:NREP 1 RP:PDB:REP 225->364|2bz0B|4e-05|17.9|140/173| RP:PFM:NREP 2 RP:PFM:REP 9->202|PF00926|1e-49|51.0|194/194|DHBP_synthase| RP:PFM:REP 223->363|PF00925|2e-11|30.4|138/169|GTP_cyclohydro2| HM:PFM:NREP 2 HM:PFM:REP 9->202|PF00926|1.4e-77|51.0|194/194|DHBP_synthase| HM:PFM:REP 215->363|PF00925|5.3e-22|24.8|149/169|GTP_cyclohydro2| GO:PFM:NREP 4 GO:PFM GO:0008686|"GO:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"|PF00926|IPR000422| GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF00926|IPR000422| GO:PFM GO:0003935|"GO:GTP cyclohydrolase II activity"|PF00925|IPR000926| GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF00925|IPR000926| RP:SCP:NREP 2 RP:SCP:REP 6->202|1g57A|4e-72|39.4|193/205|d.115.1.2| RP:SCP:REP 225->366|2bz0A1|1e-17|20.9|139/168|c.144.1.1| HM:SCP:REP 6->209|1k4iA_|1e-78|54.9|204/216|d.115.1.2|1/1|YrdC/RibB| HM:SCP:REP 207->366|2bz1A1|2e-19|24.4|160/0|c.144.1.1|1/1|RibA-like| OP:NHOMO 1125 OP:NHOMOORG 915 OP:PATTERN -----------------------1-----1---11111-----121--11-----------------1 1111111111121111122-2111212222222111114311111-111111-111111111111221111----1-----12111111212-111---1121111111111111111111111111121111121111-111111111111211111111111111111111111111111111111---1111111111111111111111111111111111------1111111111111111111111--1----2---1111----111-111111-------11111111111-----------------------11-11222211311111111111-111--1111111211211111-1-11111-111111112111111111111-1111111111-11111111111112211212221111111112111111111111111111111121111111111---------------111111332122222233323122222222222222333333211222211221111111111111211111111111111122121222222221212311122111112112111111111111111111111111222231111112122222122222222222221-1111111-11111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111121-11121111111111122222221112111113122233331222111111111111122222232222111111111111111111111111----------1-------------------------11-111-111111 ------1-----1111112111111111111111111111111111111111111111111111111111111111111111111111-11111111111121111-12-------------------------------------------------1----1-----------111181111113361321132221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 341 STR:RPRED 93.2 SQ:SECSTR ###ccTHHHHHHHHHHHTcccEEEEccccccccccccccTTcccHHHHHHHHHHcccccEEEEcHHHHHHTTccccccccTTccccccccccccTTTccccccTTHHHHHHHHHTcccccccccccccccEEEEcccccTTccccccHHHHHHHHTTTccccccccccccTTcccccHHHHHHHHHHHHcEEEEcHHHHHHH######################EEEEEEETTTccEEEEEEEccccccccEEEEEccHHHHTcccccccHHHHHHHHHHHHHHHTcEEEEEEccTTTTTcHHHHHHcHHHHHHTTTcccccccTHHHHHHHHHTTcccEEEEcccHHHHHHHHHTTccEEEEEcc DISOP:02AL 1-6| PSIPRED ccccccccHHHHHHHHHcccEEEEEEcccccccEEEEEEHHHccHHHHHHHHHHcccEEEEEccHHHHHHccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccHHHccccccccEEcccccccccccccHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHHcccEEEEHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccEEEEEcccccHHHHccccccHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHcccEEEEEEcc //