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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ribD
DDBJ      :ribD         5-amino-6-(5-phosphoribosylamino)uracil reductase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  745/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.71.1c.97.1
:351 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->311 2b3zD PDBj 1e-38 32.5 %
:RPS:PDB   1->313 2b3zA PDBj 5e-48 31.9 %
:RPS:SCOP  1->140 1wwrA1  c.97.1.2 * 7e-21 26.5 %
:RPS:SCOP  141->313 2b3zA1  c.71.1.2 * 4e-29 27.6 %
:HMM:SCOP  1->140 2b3zA2 c.97.1.2 * 2.2e-42 41.6 %
:HMM:SCOP  141->353 2b3zA1 c.71.1.2 * 3e-42 30.5 %
:RPS:PFM   1->69 PF00383 * dCMP_cyt_deam_1 2e-06 43.3 %
:RPS:PFM   141->306 PF01872 * RibD_C 2e-12 30.2 %
:HMM:PFM   1->93 PF00383 * dCMP_cyt_deam_1 1e-22 49.4 85/102  
:HMM:PFM   158->311 PF01872 * RibD_C 7.5e-20 26.4 140/200  
:HMM:PFM   105->163 PF07078 * FYTT 0.00063 32.1 56/316  
:BLT:SWISS 1->311 RIBD_BACSU 4e-38 32.5 %
:PROS 44->82|PS00903|CYT_DCMP_DEAMINASES
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21852.1 GT:GENE ribD GT:PRODUCT 5-amino-6-(5-phosphoribosylamino)uracil reductase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1017186..1018241) GB:FROM 1017186 GB:TO 1018241 GB:DIRECTION - GB:GENE ribD GB:PRODUCT 5-amino-6-(5-phosphoribosylamino)uracil reductase GB:PROTEIN_ID AAZ21852.1 GB:DB_XREF GI:71062849 GB:GENE:GENE ribD LENGTH 351 SQ:AASEQ MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLIYSKDTKRISDIHTDRFTHFLRYKNDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFYYNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNKLKINKKLGKDVITLYK GT:EXON 1|1-351:0| BL:SWS:NREP 1 BL:SWS:REP 1->311|RIBD_BACSU|4e-38|32.5|308/361| PROS 44->82|PS00903|CYT_DCMP_DEAMINASES|PDOC00702| SEG 80->88|niiiknkik| SEG 325->344|lkelkknyknklkinkklgk| BL:PDB:NREP 1 BL:PDB:REP 1->311|2b3zD|1e-38|32.5|308/360| RP:PDB:NREP 1 RP:PDB:REP 1->313|2b3zA|5e-48|31.9|310/359| RP:PFM:NREP 2 RP:PFM:REP 1->69|PF00383|2e-06|43.3|67/100|dCMP_cyt_deam_1| RP:PFM:REP 141->306|PF01872|2e-12|30.2|159/198|RibD_C| HM:PFM:NREP 3 HM:PFM:REP 1->93|PF00383|1e-22|49.4|85/102|dCMP_cyt_deam_1| HM:PFM:REP 158->311|PF01872|7.5e-20|26.4|140/200|RibD_C| HM:PFM:REP 105->163|PF07078|0.00063|32.1|56/316|FYTT| GO:PFM:NREP 4 GO:PFM GO:0008270|"GO:zinc ion binding"|PF00383|IPR002125| GO:PFM GO:0016787|"GO:hydrolase activity"|PF00383|IPR002125| GO:PFM GO:0008703|"GO:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"|PF01872|IPR002734| GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF01872|IPR002734| RP:SCP:NREP 2 RP:SCP:REP 1->140|1wwrA1|7e-21|26.5|132/151|c.97.1.2| RP:SCP:REP 141->313|2b3zA1|4e-29|27.6|170/214|c.71.1.2| HM:SCP:REP 1->140|2b3zA2|2.2e-42|41.6|137/0|c.97.1.2|1/1|Cytidine deaminase-like| HM:SCP:REP 141->353|2b3zA1|3e-42|30.5|210/0|c.71.1.2|1/1|Dihydrofolate reductase-like| OP:NHOMO 805 OP:NHOMOORG 773 OP:PATTERN ----1----------------------------1---111111----------1-1-111-1------ 1111-11-11-11-11-11-1-11111111111111-111--------111111111-111111-11-1--1---1-----11111221111-111---1111111111111111111111111111111111111111--11111111111111111111111111112111111111111111111---1111111121311112111111211111111111------1111111111111111111111--1----1---1-11----111-1-1111-------11111111111-----------------------11-11111111111111111111-111--1111111111211111-1-11111----11111111111111111111111111111-11-11111111111-11111111111--11-21111111111111111--1-1111111111111---------------11111111111111111111121111111122221211111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1-11-1111111111--111-111211111111211111111111111-1111111-11111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111212111111111111111111111121111122221111111111111111111111111----------1-------------------------11-111-111111 ----------------------------------------------------------------1---------1---------1-------------------------------------------------------------------------1----------------11----1---3122-22-1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 324 STR:RPRED 92.3 SQ:SECSTR HHHHHHHHGGGTTccTTccccEEEEEccccEEEEEEcccTTcccHHHHHHHHHGGGGTTcEEEEcccccccccccccHHHHHHHHTccEEEEccccccTTTTTHHHHHHHTTTcEEEEcTTHHHHHHHTHHHHHHHHHcccEEEEEEEEETTcccTTcccTTcccHHHHHHHTTHHHHccEEEEEHHHHHHHccccccccTTcccHccEEEEEcTTccccTTcHHHHcccccEEEEEcTTccHHHHHHHHTTTcEEEEcccccccccHHHHHHHHHHTTccEEEEEEcHHHHHHHHHHTcccEEEEEEEcccccEEEEEcccEc########################### DISOP:02AL 158-162| PSIPRED cHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHccEEEEEcHHHEEcccccEEEEccccccccEEEEEcccccccccccEEEcccccEEEEEEccccHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHccccEEEEEccHHHHHHHHHccccEEEEEEEEcEEEEccccccccccccccccccccEEEEEEEEccEEEEEEc //