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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ribH
DDBJ      :ribH         riboflavin synthase
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  660/915 : Eukaryota  32/199 : Viruses  0/175   --->[See Alignment]
c.16.1
:128 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   39->126 2o6hC PDBj 4e-16 50.0 %
:RPS:PDB   39->127 1c41A PDBj 8e-16 32.6 %
:RPS:SCOP  4->127 1di0A  c.16.1.1 * 1e-26 23.4 %
:HMM:SCOP  4->130 1ejbA_ c.16.1.1 * 6.9e-34 35.4 %
:RPS:PFM   39->125 PF00885 * DMRL_synthase 2e-16 42.5 %
:HMM:PFM   3->126 PF00885 * DMRL_synthase 1.3e-40 35.5 124/144  
:BLT:SWISS 39->123 RISB_CORK4 3e-18 47.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21849.1 GT:GENE ribH GT:PRODUCT riboflavin synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1015115..1015501) GB:FROM 1015115 GB:TO 1015501 GB:DIRECTION - GB:GENE ribH GB:PRODUCT riboflavin synthase GB:PROTEIN_ID AAZ21849.1 GB:DB_XREF GI:71062846 GB:GENE:GENE ribH LENGTH 128 SQ:AASEQ MKRKYLIVIADYYKDISKGLLSSAKSILPKSSLIKIINVPGVFEIPVTISKNIKKYDAFLALGCVIKGQTPHFDFISHSSTDAIMKLSVDSKKPIGNGIITCLNMRQAIARKKKGREAAQAVISVLSQ GT:EXON 1|1-128:0| BL:SWS:NREP 1 BL:SWS:REP 39->123|RISB_CORK4|3e-18|47.1|85/159| SEG 20->37|llssaksilpksslikii| BL:PDB:NREP 1 BL:PDB:REP 39->126|2o6hC|4e-16|50.0|88/146| RP:PDB:NREP 1 RP:PDB:REP 39->127|1c41A|8e-16|32.6|89/165| RP:PFM:NREP 1 RP:PFM:REP 39->125|PF00885|2e-16|42.5|87/143|DMRL_synthase| HM:PFM:NREP 1 HM:PFM:REP 3->126|PF00885|1.3e-40|35.5|124/144|DMRL_synthase| GO:PFM:NREP 2 GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF00885|IPR002180| GO:PFM GO:0009349|"GO:riboflavin synthase complex"|PF00885|IPR002180| RP:SCP:NREP 1 RP:SCP:REP 4->127|1di0A|1e-26|23.4|124/148|c.16.1.1| HM:SCP:REP 4->130|1ejbA_|6.9e-34|35.4|127/168|c.16.1.1|1/1|Lumazine synthase| OP:NHOMO 705 OP:NHOMOORG 699 OP:PATTERN -----------------------------1-----1-1-------1---------1-11--------- -11-111111111111111-1111111111111111111111--1-111---111--1----11-111111----1-----1-11111--11--11-----1---11111--------------111111111111-----111-11-1111-1111-1--------11111--1111-1--11-1-----1111111111111111111111111111111111------1111111111111111111111-------1---1111----1-1-111111-------11111111111-----------------------11-11111111111111111111-111--1111111111211111-1-11111---111111111111111111111111111111-111111111111111111111111--1111111111--111111111111111111111111111---------------1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111-1111111111111111111-1111--11111--11111111111111111111-111111111111111111111111111111111111111111111111111--1111111111111111---------1111-11111111111111111111111111111111111111111111---------111111111111111--------------1111-------------------------------------------1-11-----1-- ------------111--------------1---1---------111-----------1----1-1-11--11-11------111-111---------------112-1-------------------------------------------------------------------1---------2--2-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 98.4 SQ:SECSTR ##cEEEEEEEcccccccHHHHHHHHHHHcTTcEEEEEEEccTTHHHHHHHHHHHcccEEEEEEEEEccccTHHHHHHHHHHHHHHHHHHHHTccEEEEEEEEccHHHHHHHccHHHHHHHHHHHHHHc PSIPRED ccEEEEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHc //