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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : rluC
DDBJ      :rluC         ribosomal large subunit pseudouridine synthase C
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  857/915 : Eukaryota  122/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:304 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   90->273 1xpiA PDBj 4e-19 33.9 %
:RPS:PDB   79->251 2apoA PDBj 2e-25 12.6 %
:RPS:SCOP  90->290 1v9kA  d.265.1.3 * 4e-41 29.0 %
:HMM:SCOP  13->70 1vioA2 d.66.1.5 * 8.4e-07 28.1 %
:HMM:SCOP  81->298 1przA_ d.265.1.3 * 3e-46 32.3 %
:RPS:PFM   100->238 PF00849 * PseudoU_synth_2 6e-16 41.4 %
:HMM:PFM   98->238 PF00849 * PseudoU_synth_2 2.2e-32 32.6 141/164  
:HMM:PFM   14->60 PF01479 * S4 7.4e-09 32.6 46/48  
:HMM:PFM   227->279 PF02221 * E1_DerP2_DerF2 0.00094 19.2 52/133  
:BLT:SWISS 15->290 RLUC_RICBR 2e-28 35.7 %
:PROS 138->152|PS01129|PSI_RLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21895.1 GT:GENE rluC GT:PRODUCT ribosomal large subunit pseudouridine synthase C GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1057276..1058190) GB:FROM 1057276 GB:TO 1058190 GB:DIRECTION - GB:GENE rluC GB:PRODUCT ribosomal large subunit pseudouridine synthase C GB:PROTEIN_ID AAZ21895.1 GB:DB_XREF GI:71062892 GB:GENE:GENE rluC LENGTH 304 SQ:AASEQ MKKSFNVDSTFNDMRIDRWIRNNLGNYPQGLIEKSLKSGKVKINNKKIKSSHKVKTGDTIDLFNFDFKETIVQKTIKFVPSEEVIKENEELIIDNNDDFIVLNKSSGISVQGGTKSKKNLVDIFARSEIFQDTKPFSVHRLDKDTSGVFIMAKHRQSAQLLTSLFRLRKVHKTYLAICHGELQKDSGEWNDDLTRYDNDREVVEKARTLYKVLDKNSICSLVEMKPITGRKHQLRKQLYAVGCPIYGDQKYKFSNTDKAINKNLMLHSYQIKFMINDKKYTYTALLPDYFKKLLKTKRLRFPNS GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 15->290|RLUC_RICBR|2e-28|35.7|269/301| PROS 138->152|PS01129|PSI_RLU|PDOC00869| SEG 37->55|ksgkvkinnkkiksshkvk| SEG 291->300|kkllktkrlr| BL:PDB:NREP 1 BL:PDB:REP 90->273|1xpiA|4e-19|33.9|180/229| RP:PDB:NREP 1 RP:PDB:REP 79->251|2apoA|2e-25|12.6|159/304| RP:PFM:NREP 1 RP:PFM:REP 100->238|PF00849|6e-16|41.4|133/149|PseudoU_synth_2| HM:PFM:NREP 3 HM:PFM:REP 98->238|PF00849|2.2e-32|32.6|141/164|PseudoU_synth_2| HM:PFM:REP 14->60|PF01479|7.4e-09|32.6|46/48|S4| HM:PFM:REP 227->279|PF02221|0.00094|19.2|52/133|E1_DerP2_DerF2| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 1 RP:SCP:REP 90->290|1v9kA|4e-41|29.0|200/227|d.265.1.3| HM:SCP:REP 13->70|1vioA2|8.4e-07|28.1|57/58|d.66.1.5|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 81->298|1przA_|3e-46|32.3|217/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2429 OP:NHOMOORG 984 OP:PATTERN --------------------------------------11111------------------------- 111--1112221121------1---1------1---1---1----111---1111--1111--11111-1--------2111-11222444414-311122223234424-2222222-211114111111111112222211111-22122211222212212111222112111112111122211221433-3333333233333322333333333333213223334611111111112211112223-33244243334444334443343333333333322333333333333333333333333332111333332333333333333343333333334331231133131121212223132214233322222322333333232322222222223-32333333222223322222222222443231322322222222222322333422222222222112222222222222212223333311111111211111111111111111111212122222223243332-1223322243233333322225371323361233221243433433421337-23332113333332133333233222322555334536734666668766668-986892-3221212122244333523333333333-33333333333333333334443344444444444444343443333332321433333333333222411111222223414555455454554335554455423325222233333-33323332222222226677355555557663312122111222222434421222223222242211111-21121221111121222222222222222221 ----111-1--133311---------------------------------------------222221112312222113222222---22211-2---1-2-21-11813142122-22213-32121392-21111--31211111-1121312111---3121-4112--2221-14856112343-3265311-2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 93.4 SQ:SECSTR ######HHHHHHHHHHHTcGGGTTcEEEGGGHHHHHHTccGGGcccHHHHHHHHHHHHHTTccEEccccEEEcGGGcccTTccccGGGccHHHHHHTEEEEEEEcccccHHHHcccTTcHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGGGHHcGGGTTcccEEEEEEEEEcccccHHHHHHHHHHHccEEEEcccEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHTTccEEEEEEETTEEEETTEEcTTccTTcEccHHHHHHHHHTcccc############## DISOP:02AL 303-304| PSIPRED ccEEEEEcccccccHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEccccEEEEccccccccccccccccccccHHHcccccEEEEEccEEEEEEccccEEEEcccccccHHHHHHHHHHHccccEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEcccEEcccccccccccccEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHccccEEccccccccccccccccHHHEEEEHEEEEccccEEEEEccccHHHHHHHHHHccccccc //