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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : rmuC
DDBJ      :rmuC         DNA recombination protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  190/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:365 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   78->318 PF02646 * RmuC 9e-16 28.9 %
:HMM:PFM   46->348 PF02646 * RmuC 4.3e-48 25.6 289/305  
:HMM:PFM   3->51 PF03748 * FliL 0.00044 28.6 49/149  
:BLT:SWISS 37->354 RMUC_XYLFT 5e-32 30.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21303.1 GT:GENE rmuC GT:PRODUCT DNA recombination protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 470546..471643 GB:FROM 470546 GB:TO 471643 GB:DIRECTION + GB:GENE rmuC GB:PRODUCT DNA recombination protein GB:PROTEIN_ID AAZ21303.1 GB:DB_XREF GI:71062300 GB:GENE:GENE rmuC LENGTH 365 SQ:AASEQ MDIILLTVLVLLLGVALAILYLNLRSKPKDESENKEAEEMANLKTEITSLKDTLNTTINTSLGSMSTSFTALSTGVTKDMTEALTKVDEKVGNFNSQVELLNKSQEGITKILAGVKKYGTLAEFSLDALIKDLLPASQFMTNVKMKEDTSENVEFAIKLQGDVLVPVDSHFPVEKFKAITDGYDADDKRAVADARAKLATAFKAKAKSVNEKYIVPPKTTDFAIVYAPTESLYKELTEYQDPTTKELLTQELMKKHKVVICGPNTLSAYLQSLHMGFQSLKVQKGATEIYDHLKTISSRFGKHFDNIIALRKKLEEAMIVVDKFGTDARSISRSLENIKDPEQVDKAVQTENVEKFVDHSKQAKN GT:EXON 1|1-365:0| BL:SWS:NREP 1 BL:SWS:REP 37->354|RMUC_XYLFT|5e-32|30.3|297/456| TM:NTM 1 TM:REGION 1->22| SEG 3->24|iilltvlvlllgvalailylnl| SEG 184->207|daddkravadaraklatafkakak| RP:PFM:NREP 1 RP:PFM:REP 78->318|PF02646|9e-16|28.9|232/296|RmuC| HM:PFM:NREP 2 HM:PFM:REP 46->348|PF02646|4.3e-48|25.6|289/305|RmuC| HM:PFM:REP 3->51|PF03748|0.00044|28.6|49/149|FliL| OP:NHOMO 192 OP:NHOMOORG 191 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------1-----------------------------1---------111111------------------------------------1----1-------------------------------------------------------1------------------------------------------------------------------------------------111111111111111111111111111111111111111111111111--------------------------------11--11--1----11-1--------1--11----------1-----------------------1-1--111-111--------1--------11111111111111-------------------------------1-----111111112111111111111111111111111--11111111111111111-111-----------1--1------1--------1-11----111-1--1----------------------------------1---------------------------------------------------------------------------------------------------------------------------1111111111------------------------------------------------------------------------11111111111111--------------------1------11--1------1--1----------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 26-85, 343-365| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccEEEEEcccccEEEEEccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccc //