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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : rodA
DDBJ      :rodA         rod shape-determining protein rodA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  816/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:373 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   95->363 PF01098 * FTSW_RODA_SPOVE 1e-45 39.6 %
:HMM:PFM   23->369 PF01098 * FTSW_RODA_SPOVE 2.1e-99 38.4 346/359  
:BLT:SWISS 97->372 RODA_HAEIN 4e-48 38.0 %
:PROS 345->360|PS00012|PHOSPHOPANTETHEINE
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22172.1 GT:GENE rodA GT:PRODUCT rod shape-determining protein rodA GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1301843..1302964) GB:FROM 1301843 GB:TO 1302964 GB:DIRECTION - GB:GENE rodA GB:PRODUCT rod shape-determining protein rodA GB:PROTEIN_ID AAZ22172.1 GB:DB_XREF GI:71063169 GB:GENE:GENE rodA LENGTH 373 SQ:AASEQ MQYNSFNTQPTFFQKLRNFDYILLICILLLGLISALSMYSTDGGQILFHSKSHISKFLIFFTMMIFMSFFNIKFWHYFAYFFYIVVLFFLVWASLYGIKASGSQRWINLYFINLQPSELMKIAIIVCLAKYYHRIQLNKVNSFQVMFVALVILILPIMLVITQPDLGTSILIALSGLVVIWLAGINIKYFVYSFIALLISMPFAIAFLQPYQKLRILTFLNPDRDPLGAGYQIIQSKIAVGSGGLTGKGFLKGTQSYLEFLPEKHTDFIFTLFAEEHGFLGSLVLLLIYIIIIYRVLRIGAISRSYFAKLFCYGYGSAIFFYVTVNMSMVLGLLPIVGSPLPIMSYGGSSMLATMIGFAIVMSAKINHKQLIA GT:EXON 1|1-373:0| BL:SWS:NREP 1 BL:SWS:REP 97->372|RODA_HAEIN|4e-48|38.0|274/371| PROS 345->360|PS00012|PHOSPHOPANTETHEINE|PDOC00012| TM:NTM 10 TM:REGION 20->41| TM:REGION 50->72| TM:REGION 79->101| TM:REGION 108->130| TM:REGION 140->162| TM:REGION 165->187| TM:REGION 190->212| TM:REGION 278->300| TM:REGION 319->341| TM:REGION 350->372| SEG 22->36|illicilllglisal| SEG 57->72|flifftmmifmsffni| SEG 77->91|yfayffyivvlfflv| SEG 148->161|valvililpimlvi| SEG 241->254|gsggltgkgflkgt| SEG 283->299|lvllliyiiiiyrvlri| RP:PFM:NREP 1 RP:PFM:REP 95->363|PF01098|1e-45|39.6|268/357|FTSW_RODA_SPOVE| HM:PFM:NREP 1 HM:PFM:REP 23->369|PF01098|2.1e-99|38.4|346/359|FTSW_RODA_SPOVE| GO:PFM:NREP 2 GO:PFM GO:0007049|"GO:cell cycle"|PF01098|IPR001182| GO:PFM GO:0016021|"GO:integral to membrane"|PF01098|IPR001182| OP:NHOMO 1565 OP:NHOMOORG 817 OP:PATTERN -------------------------------------------------------------------- 22212-1----1--12222-22112-222222211112221222---1-------111----1-1-12232-------3222322222111111112--212222122221111111122111112122122222122234---3222222222222222222112222222222222222221--111223343333344444445444366434443335322555555322222222222222223222232212212222221122112121322222211112211111111111---------1---21122211122332444444443443233333333322323223333322223333212212-222211111111--1111111111111111111-11-1111--121111-11-11-11111221221111111222222222112211122--------22222222222222211112111212222222222222222222222222222222222222222222222222112222222111111122222222221222222222222222222222222222122211111-112111111112121222222222222222222223222222322221-2112211-11122222222222222222-22322222222221222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222221111111112333222222332223322222222222221211111111222212122--------------------------2211221222221 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 373-374| PSIPRED cccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccEEEcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHHHHHHHHHHHHHHccccccc //