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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : rpiB
DDBJ      :rpiB         ribose-5-phosphate isomerase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  509/915 : Eukaryota  54/199 : Viruses  0/175   --->[See Alignment]
c.121.1
:141 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->141 1o1xA PDBj 2e-31 50.0 %
:RPS:PDB   2->141 3c5yH PDBj 9e-10 13.9 %
:RPS:SCOP  3->141 1nn4A  c.121.1.1 * 2e-23 41.0 %
:HMM:SCOP  1->142 1uslA_ c.121.1.1 * 2.7e-51 48.6 %
:RPS:PFM   3->141 PF02502 * LacAB_rpiB 4e-39 51.8 %
:HMM:PFM   3->141 PF02502 * LacAB_rpiB 2.3e-55 54.0 139/140  
:BLT:SWISS 4->141 Y278_RICBR 8e-34 46.4 %
:PROS 66->82|PS00237|G_PROTEIN_RECEP_F1_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21855.1 GT:GENE rpiB GT:PRODUCT ribose-5-phosphate isomerase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1020038..1020463) GB:FROM 1020038 GB:TO 1020463 GB:DIRECTION - GB:GENE rpiB GB:PRODUCT ribose-5-phosphate isomerase GB:PROTEIN_ID AAZ21855.1 GB:DB_XREF GI:71062852 GB:GENE:GENE rpiB LENGTH 141 SQ:AASEQ MKKIFLSSDHAGYKLKELIKLHLDKKKINYTDLGPFNSESVDYPDYAHKVAKKVKTNNNHAGILVCGSGMGMNIAANRHKNIRAAQCFNLKSTKLSRLHNNANIITLGSRLLTKKTAINCVSVFLNTKFEGGRHAKRIKKI GT:EXON 1|1-141:0| BL:SWS:NREP 1 BL:SWS:REP 4->141|Y278_RICBR|8e-34|46.4|138/144| PROS 66->82|PS00237|G_PROTEIN_RECEP_F1_1|PDOC00210| BL:PDB:NREP 1 BL:PDB:REP 3->141|1o1xA|2e-31|50.0|136/142| RP:PDB:NREP 1 RP:PDB:REP 2->141|3c5yH|9e-10|13.9|137/204| RP:PFM:NREP 1 RP:PFM:REP 3->141|PF02502|4e-39|51.8|139/140|LacAB_rpiB| HM:PFM:NREP 1 HM:PFM:REP 3->141|PF02502|2.3e-55|54.0|139/140|LacAB_rpiB| GO:PFM:NREP 1 GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02502|IPR003500| RP:SCP:NREP 1 RP:SCP:REP 3->141|1nn4A|2e-23|41.0|139/159|c.121.1.1| HM:SCP:REP 1->142|1uslA_|2.7e-51|48.6|142/157|c.121.1.1|1/1|Ribose/Galactose isomerase RpiB/AlsB| OP:NHOMO 733 OP:NHOMOORG 565 OP:PATTERN --1-------------1--------------------------------------------------- 1231111111111111111-111113111111122211111111333112212121111111121231211-------1111-1111111111111---111112111-2---------------11111111121111--1121-1-------------------1--1------------------111-111111111111111112111111111111-1244454411122222222222222322211---22--1------22-------312242211422222222222223333333332233222---422411143111111111122111311111312111111111-211121111141121--------------------111111111111---1-----1---1---11222122------------111--------1--1-1131111111111111111-111111111111111111------------1111----1111--------------1----1-1--1----------------------1-111111111111111112111111211-121111111111111111111111111----3-------1--------------------------------1-1-1--1--11111----111111-1--1-11111211111--1---------------------------11111111111-------------1--21---2-1-------11----------1-----------------1----------------------------------------11111111--------1-1----1-11111111111111111111111111111111 --------2111--111111-11111211----1111111111111----1--1111111111-2---------1-----------------1---1111--1------1---------------------------------------------------------------------------1---1-1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 141 STR:RPRED 100.0 SQ:SECSTR ccEEEEcccGGGGGGHHHHHHHHGGGTcEEEEccccTTccccccHHHHHHHHHHHHHTcEcccEEEEEcccHHHHHTTTcTccEEEcccHHHHHHHHHHTcccEEEEccTTccHHHHHHHHHHHHcccccccccGGGHHHH PSIPRED ccEEEEEEcHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHccccEEEEEEEcHHHHHHHHHHccccEEEEcHHHccHHHHHHHHHHHHcccccccHHHHHHHcc //