[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sbcB
DDBJ      :sbcB         Exodeoxyribonuclease I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  223/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.124.1c.55.3
:475 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->294 1fxxA PDBj 5e-16 29.0 %
:RPS:PDB   2->277 3cg7B PDBj 3e-08 10.5 %
:RPS:SCOP  2->194 1j9aA  c.55.3.5 * 2e-11 18.0 %
:RPS:SCOP  342->441 1poiA  c.124.1.2 * 2e-04 15.0 %
:HMM:SCOP  1->471 1fxxA_ c.55.3.5 * 1e-113 36.2 %
:RPS:PFM   253->446 PF08411 * Exonuc_X-T_C 6e-07 28.5 %
:HMM:PFM   251->466 PF08411 * Exonuc_X-T_C 3.6e-14 24.8 206/269  
:HMM:PFM   7->185 PF00929 * Exonuc_X-T 3.1e-06 19.5 159/165  
:BLT:SWISS 5->393 EX1_HAEIN 1e-20 27.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21305.1 GT:GENE sbcB GT:PRODUCT Exodeoxyribonuclease I GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 472372..473799 GB:FROM 472372 GB:TO 473799 GB:DIRECTION + GB:GENE sbcB GB:PRODUCT Exodeoxyribonuclease I GB:PROTEIN_ID AAZ21305.1 GB:DB_XREF GI:71062302 GB:GENE:GENE sbcB LENGTH 475 SQ:AASEQ MNLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFNFRCRLPEGEVPQAMALIVNKTSVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITNATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAELTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYHFGKNYRFVVAPLHPKHCIHPIYQWGQAFDLKIDPIPLFDMSISELKSAIKKLKFLRTIRSNKAPIILDASYGLQVEPYSNLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDSQVDLLAEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPETLPPDMFKTIKRGIAERILSDEKEKWWTCKEFYFECDNLRDRYTNEKDEKKLKFLDEINEFVEGIQKKYEQA GT:EXON 1|1-475:0| BL:SWS:NREP 1 BL:SWS:REP 5->393|EX1_HAEIN|1e-20|27.5|367/473| SEG 449->460|ekdekklkflde| BL:PDB:NREP 1 BL:PDB:REP 40->294|1fxxA|5e-16|29.0|245/459| RP:PDB:NREP 1 RP:PDB:REP 2->277|3cg7B|3e-08|10.5|258/295| RP:PFM:NREP 1 RP:PFM:REP 253->446|PF08411|6e-07|28.5|186/269|Exonuc_X-T_C| HM:PFM:NREP 2 HM:PFM:REP 251->466|PF08411|3.6e-14|24.8|206/269|Exonuc_X-T_C| HM:PFM:REP 7->185|PF00929|3.1e-06|19.5|159/165|Exonuc_X-T| GO:PFM:NREP 2 GO:PFM GO:0006281|"GO:DNA repair"|PF08411|IPR013620| GO:PFM GO:0008852|"GO:exodeoxyribonuclease I activity"|PF08411|IPR013620| RP:SCP:NREP 2 RP:SCP:REP 2->194|1j9aA|2e-11|18.0|167/184|c.55.3.5| RP:SCP:REP 342->441|1poiA|2e-04|15.0|100/317|c.124.1.2| HM:SCP:REP 1->471|1fxxA_|1e-113|36.2|453/0|c.55.3.5|1/1|Ribonuclease H-like| OP:NHOMO 223 OP:NHOMOORG 223 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1----------------1-----11------------------------------------1-----------------------------------1----------------------------------------1111111-11111-11-----1--------11------1--------------------------------------------------------111111111111111111111111111111-------1----111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111-11111----1-111111111111111111----------1111111111111111111111111111-111111111111111111111111111111--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 359 STR:RPRED 75.6 SQ:SECSTR cEEEEEEEEEcccTTccccEEEEEEEEEETTTTEEEEEEEEccccccccccHHHHHHHcccHHHHcHTcccHHHHHHHHHHHHHTTTcccEEEEEcccHHHHTHHHHHHHHTTccccTTcccGGGcEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHHHTcccccTTcHHHHHHHHHHHHHHHHHTTcccccEEEEcccGGGGccccccTTGHHHHHHcccEEEEccGGGccGGGTTTEEcccccccTTTcccTTTTTcccccccGGGcccTEGTTcTTcccHHHHHHTcGccHHHHHHHcHHHHHHHHHHHHHcTHHHHHHHHHHTccccGGGcccc#####GGGcGGGccccHHHHH############################################################################################################### DISOP:02AL 472-475| PSIPRED cEEEEEEEEEcccccccccEEEEEEEEEcccccEEccEEEEEEccccccccHHHHHHHcccHHHHHHccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHccHHHHHcccHHHHHHHHcccHHHHEEEEccccEEEcccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHcccccccccHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccc //