[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sbcC
DDBJ      :sbcC         possible sbcC
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:319 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   75->244 2cgeA PDBj 3e-06 29.4 %
:RPS:PDB   8->85 1bmfC PDBj 2e-05 13.9 %
:RPS:SCOP  145->226 1ex1A1  c.1.8.7 * 7e-05 25.3 %
:HMM:PFM   120->196 PF06790 * UPF0259 0.00013 25.3 75/248  
:BLT:SWISS 21->228 NUF2_CHICK 2e-07 31.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21965.1 GT:GENE sbcC GT:PRODUCT possible sbcC GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1117612..1118571) GB:FROM 1117612 GB:TO 1118571 GB:DIRECTION - GB:GENE sbcC GB:PRODUCT possible sbcC GB:NOTE ATPase involved in DNA repair GB:PROTEIN_ID AAZ21965.1 GB:DB_XREF GI:71062962 GB:GENE:GENE sbcC LENGTH 319 SQ:AASEQ MIKDKFNNIKYIIFVSLMILFLMSNLTYANDAEKEYKKFIKETNKIRKQLDKLPTEASDELTVIDEAIKELDQAFDFANENFKENKIEITKITLDYIDKSLADISKLAPKEFSNDLSVVDMKSLPKENFQEIMETSKQMKIIKNEKITSLVENMTIVEKEGLNLFQVSKNLNELGVNTLNFEDIAKVVSENSSLKEDVLNASKKGISEEDYTKQLETIAEAERLGITESTTAVADAAKSQNLDVDVMPTLETMQSDFFDAAAHNEAMAEMAAEIASGDIGSDTAKAEAAASYSESDRSDQKSKSDADAGSLATEACPTC GT:EXON 1|1-319:0| BL:SWS:NREP 1 BL:SWS:REP 21->228|NUF2_CHICK|2e-07|31.6|193/469| TM:NTM 1 TM:REGION 7->29| SEG 260->275|aaahneamaemaaeia| SEG 281->299|sdtakaeaaasysesdrsd| BL:PDB:NREP 1 BL:PDB:REP 75->244|2cgeA|3e-06|29.4|163/405| RP:PDB:NREP 1 RP:PDB:REP 8->85|1bmfC|2e-05|13.9|72/492| HM:PFM:NREP 1 HM:PFM:REP 120->196|PF06790|0.00013|25.3|75/248|UPF0259| RP:SCP:NREP 1 RP:SCP:REP 145->226|1ex1A1|7e-05|25.3|75/388|c.1.8.7| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 242 STR:RPRED 75.9 SQ:SECSTR HTccccccccccHHHHHHHHHHHHTTTTTTccHHHHHHHHHHH######HHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccEEEETTEEEEcccEHHEcccccGGGTTcEEEEEEccccccccTTcTHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHTHHHHcTTTHHHHHTTcEEcccccccccEEHHHHHHTcTTcccEEEEEccccHHHHHTcTTHcHHHHHHTccEHHcc####################################################################### DISOP:02AL 1-6, 202-203, 286-310| PSIPRED ccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEHHHHHHHHHHHHHHcHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHccccc //