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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : scpB
DDBJ      :scpB         segregation and condensation protein b
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  513/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:233 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->170 1t6sA PDBj 5e-20 33.6 %
:RPS:SCOP  24->91 1t6sA1  a.4.5.60 * 4e-08 25.0 %
:RPS:SCOP  96->170 1t6sA2  a.4.5.60 * 2e-07 43.2 %
:HMM:SCOP  15->94 1t6sA1 a.4.5.60 * 5.6e-12 26.2 %
:HMM:SCOP  93->170 1t6sA2 a.4.5.60 * 2e-24 55.8 %
:RPS:PFM   26->177 PF04079 * DUF387 8e-32 44.4 %
:HMM:PFM   25->178 PF04079 * DUF387 4.8e-50 43.8 153/159  
:BLT:SWISS 26->182 SCPBL_COXBU 4e-27 38.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21782.1 GT:GENE scpB GT:PRODUCT segregation and condensation protein b GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 956384..957085 GB:FROM 956384 GB:TO 957085 GB:DIRECTION + GB:GENE scpB GB:PRODUCT segregation and condensation protein b GB:PROTEIN_ID AAZ21782.1 GB:DB_XREF GI:71062779 GB:GENE:GENE scpB LENGTH 233 SQ:AASEQ MTKIKKETNNNIVTFPSKMNDGEREVEAIIFAAAEPLDIDTIESKISKKIDVLKSLQKLQKEYSLRGINLVCISNKWSFRTSENLSNLMSQEKTVEKKLSRAAVETLAIIVYHQPVTRAEIEEIRGVAFGTNTLEILMELNWVKPQGRKDVPGKPIQYGTTDDFLSHFSLQKLSDLPTVDELGSAGLIDSSNIDNAIFGTGKFYKEKQVEKKEDIYENIDEMLGGTLSPDEEK GT:EXON 1|1-233:0| BL:SWS:NREP 1 BL:SWS:REP 26->182|SCPBL_COXBU|4e-27|38.1|155/209| BL:PDB:NREP 1 BL:PDB:REP 30->170|1t6sA|5e-20|33.6|140/162| RP:PFM:NREP 1 RP:PFM:REP 26->177|PF04079|8e-32|44.4|151/160|DUF387| HM:PFM:NREP 1 HM:PFM:REP 25->178|PF04079|4.8e-50|43.8|153/159|DUF387| RP:SCP:NREP 2 RP:SCP:REP 24->91|1t6sA1|4e-08|25.0|68/85|a.4.5.60| RP:SCP:REP 96->170|1t6sA2|2e-07|43.2|74/77|a.4.5.60| HM:SCP:REP 15->94|1t6sA1|5.6e-12|26.2|80/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 93->170|1t6sA2|2e-24|55.8|77/0|a.4.5.60|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 536 OP:NHOMOORG 517 OP:PATTERN -----------------------1------------------------11------------------ 111---------1----11-11111-111111----------1-----111-1----1----1---1---1-------1111-----------------------11-1---------------111111111-1111111---11--------------------------------------11111111111111111111111111111111111111111111111111---------------11--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-1-111111111-111111111-----311113111111111111111112---1-11--451-1114111211111211111111111211111111111111111-----------------------------11111-1111111111111111111111111111111111111111111111111111111111111111111111111-1-----------111111111111111---------------------------1111-111-111-1111111111111111111--11111--------------------------------------------------------------------------------------------11111111111111----------------11111111111111111111111111111------------------------11111111111111---1111111--------11-------1111111111111111111-----------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 148 STR:RPRED 63.5 SQ:SECSTR ######################HHHHHHHHHHccccccHHHHHHHTTcccHHHHHHHHHHHHHHHHTEEEEEETTEEEEEEcGGGHHHHHHccHHHHHHHHHHHHHHHHHHHHccEEHHHHHHHHTccccccHHHHHHHTTcEEEEEEcccTTccEEEEEcHHHHHHTTc############################################################### DISOP:02AL 1-15, 95-98, 199-220, 223-233| PSIPRED cccccccccccEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHcccEEEccccccccccEEHHccHHHHHHcccccHHHccccccHHHHcccccccHHHHHccccccccHHHHHcccccccccHHHccccccccccc //