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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sdhA
DDBJ      :sdhA         succinate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  59/68 : Bacteria  799/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->590 1zoyA PDBj 0.0 60.3 %
:RPS:PDB   8->590 2bs2A PDBj e-103 35.0 %
:RPS:SCOP  12->290 1e7pA2  c.3.1.4 * 1e-84 39.3 %
:RPS:SCOP  238->356 3cirM3  d.168.1.1 * 5e-16 49.2 %
:RPS:SCOP  450->590 1nekA1  a.7.3.1 * 1e-40 34.3 %
:HMM:SCOP  1->441 1jnrA2 c.3.1.4 * 4.8e-88 42.4 %
:HMM:SCOP  449->590 2bs2A1 a.7.3.1 * 4.3e-49 43.8 %
:RPS:PFM   12->403 PF00890 * FAD_binding_2 e-100 56.1 %
:RPS:PFM   461->570 PF02910 * Succ_DH_flav_C 4e-24 46.4 %
:HMM:PFM   12->403 PF00890 * FAD_binding_2 1.6e-128 47.5 373/421  
:HMM:PFM   458->590 PF02910 * Succ_DH_flav_C 2.2e-47 50.0 128/129  
:BLT:SWISS 3->590 DHSA_RICCN 0.0 67.7 %
:PROS 46->55|PS00504|FRD_SDH_FAD_BINDING

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21064.1 GT:GENE sdhA GT:PRODUCT succinate dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(245159..246931) GB:FROM 245159 GB:TO 246931 GB:DIRECTION - GB:GENE sdhA GB:PRODUCT succinate dehydrogenase GB:NOTE flavoprotein chain, sdhA GB:PROTEIN_ID AAZ21064.1 GB:DB_XREF GI:71062061 GB:GENE:GENE sdhA LENGTH 590 SQ:AASEQ MSSYKIIDHEYDVIVLGAGGSGLRAAVGLSEAGLKTACISKVFPTRSHTSAAQGGISASLGNMGEDDWRWHMYDTVKGADWLGDQDSIEYLCKEAPAAVIELEKYGVPFSRTDDGKIYQRPFGGMTKNYGNGIVQRTCAAADRTGHAILHTLYGQALKHNTEFFIEYFALDLLMKDGECKGLIAWNLNDGTIHRFRAHSTIIATGGYGKAYYSATSAHTCTGDGNAMVLRAGLPLQDMEFVQFHPTGIYGHGTLISEGVRGEGGYLVNSKGERFMERYAPKAKDLASRDVVSRSMSIEINEGRGVGKEQDHVHLHLSHLDKNIIESRLPGITEAARLFANVDVTKEPIPVVPTVHYNMGGIPTNYKAEVLTGNDSETVPGLMAIGEAACVSVHGANRLGSNSLIDLVVFGRAAAKRAAELVKPGTPHEDIGEAETEKCLERFDKLRNSNGENSTAELRLSMQKTMQSKCAVFRTEKTLKEGVDNIRKAYDGMESISVKDKSLVFNTDLVETLEFDNLIRQAITTVDSAYNRQESRGAHAREDFPKRDDEKFMQHTIAWCNGKDSKIGYRPVTKTTLTNEVQYFPPQERVY GT:EXON 1|1-590:0| BL:SWS:NREP 1 BL:SWS:REP 3->590|DHSA_RICCN|0.0|67.7|588/596| PROS 46->55|PS00504|FRD_SDH_FAD_BINDING|PDOC00393| BL:PDB:NREP 1 BL:PDB:REP 2->590|1zoyA|0.0|60.3|589/613| RP:PDB:NREP 1 RP:PDB:REP 8->590|2bs2A|e-103|35.0|571/655| RP:PFM:NREP 2 RP:PFM:REP 12->403|PF00890|e-100|56.1|369/375|FAD_binding_2| RP:PFM:REP 461->570|PF02910|4e-24|46.4|110/114|Succ_DH_flav_C| HM:PFM:NREP 2 HM:PFM:REP 12->403|PF00890|1.6e-128|47.5|373/421|FAD_binding_2| HM:PFM:REP 458->590|PF02910|2.2e-47|50.0|128/129|Succ_DH_flav_C| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 3 RP:SCP:REP 12->290|1e7pA2|1e-84|39.3|272/336|c.3.1.4| RP:SCP:REP 238->356|3cirM3|5e-16|49.2|63/64|d.168.1.1| RP:SCP:REP 450->590|1nekA1|1e-40|34.3|137/138|a.7.3.1| HM:SCP:REP 1->441|1jnrA2|4.8e-88|42.4|309/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 449->590|2bs2A1|4.3e-49|43.8|137/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 2304 OP:NHOMOORG 1045 OP:PATTERN 11-1-12222122222-2112211322332121111111111111111-----111111111111-21 2322612111111234444-45223444444344554354233223222111332314--334233345321111222-22222222222222222---21311121233111-11111111111333333333332222211-412223222222222211122223233122122221112221222212222222222222222222222222222222122222221221111111111111112111112-111111121111-1-1111-111-----------------------------------11---111-253121111111-11113312212312-21123451231133----1-2-222222211111232342322222211111111112-32222324232122232222222224222122222312211111111222-23121121111121111111111111111111112222111113222222222223323222212222232322443222222222333232221332222222222223231222222422231423442222333334252221122221112111111134434113332222222345665265544647647551-12232------33442433333333333-333333333333233333343443332333333333333333332232222213333333333331122222222222222121111111111-222133333222222333233232232232222222222222233333333343333111111111122221131332222------------------------------------------1---222 11--112-422-1124243331224213322332222343233333111123321121221213321212332124424523332422-14121272122231434-1122211122111-12-121224d1-4421111111---111111111221113225143411A23211223u4342232642323243331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 590 STR:RPRED 100.0 SQ:SECSTR EccccTTEEEccEEEEcccHHHHHHHHHHHTTTccEEEEccccGGGcGGGGccccEEccccccGGccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEcccccccccccTTcccccEEccTTcHHHHHHHHHHHHHHHHTcEEEccEEEEEEEEETTEEEEEEEEETTTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEcccTTTcccccTHHHHHTcEEEcTTccccHHHHcTTTGGGccHHHHHHHHHHHHHTTTcccTTcccEEEEcGGGcHHHHHHHcHHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTcccEcTTTcccccTEEEcGGGEEccccTTcccTTHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHTTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccTTcccEETTTccEEEEEEcccTTcEEEEEEccGGGccHHHHHcccccccc DISOP:02AL 1-3| PSIPRED cccccccccEEcEEEEcccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEccEEEEEEEEccEEEEEEEEEccccEEEEEEEcEEEEEcccHHHHHccccccccccHHHHHHHHHccccEEcccEEEEEEEEEcccccEEEccccccccEEEccccccHHHcccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEccccEEEEccEEEcccEEEEEccccccccccEEEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccEEEEEEEEccccEEEEEEcEEEEccccccccccccccc //