[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sdhC
DDBJ      :sdhC         Succinate dehydrogenase cytochrome b
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  130/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
f.21.2
:127 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->109 1yq3C PDBj 3e-12 39.8 %
:RPS:SCOP  4->122 1nekC  f.21.2.2 * 2e-19 23.5 %
:HMM:SCOP  1->121 1nekC_ f.21.2.2 * 2.9e-24 33.9 %
:RPS:PFM   9->117 PF01127 * Sdh_cyt 8e-10 31.2 %
:HMM:PFM   1->118 PF01127 * Sdh_cyt 1.9e-28 30.8 117/121  
:BLT:SWISS 3->121 DHSC_RICFE 2e-19 37.7 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21066.1 GT:GENE sdhC GT:PRODUCT Succinate dehydrogenase cytochrome b GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(247259..247642) GB:FROM 247259 GB:TO 247642 GB:DIRECTION - GB:GENE sdhC GB:PRODUCT Succinate dehydrogenase cytochrome b GB:PROTEIN_ID AAZ21066.1 GB:DB_XREF GI:71062063 GB:GENE:GENE sdhC LENGTH 127 SQ:AASEQ MDNNNPLSPHIQIYRWHISSLVSISHRITGIVNIFAITVICLWIFSLLLGESSYDLTKLFLQSIFGKFIIICLTWSFSFQVLSEIRHLVMDLGYGFELKTTKITGLFVIFGSIFFTILFYLLGRNFI GT:EXON 1|1-127:0| BL:SWS:NREP 1 BL:SWS:REP 3->121|DHSC_RICFE|2e-19|37.7|114/124| TM:NTM 3 TM:REGION 30->52| TM:REGION 57->79| TM:REGION 102->124| BL:PDB:NREP 1 BL:PDB:REP 3->109|1yq3C|3e-12|39.8|93/139| RP:PFM:NREP 1 RP:PFM:REP 9->117|PF01127|8e-10|31.2|109/120|Sdh_cyt| HM:PFM:NREP 1 HM:PFM:REP 1->118|PF01127|1.9e-28|30.8|117/121|Sdh_cyt| GO:PFM:NREP 1 GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF01127|IPR000701| RP:SCP:NREP 1 RP:SCP:REP 4->122|1nekC|2e-19|23.5|119/129|f.21.2.2| HM:SCP:REP 1->121|1nekC_|2.9e-24|33.9|121/129|f.21.2.2|1/1|Fumarate reductase respiratory complex transmembrane subunits| OP:NHOMO 141 OP:NHOMOORG 139 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111111111111111111111-1111111111-111111111111111111111111111-11111111----11-1---1------111111111111111-1--11-1--------------------------------------------------------------------------------------------------------------------------------------------1---------1------11-------11---------------------------------------------------------------------------------------------1---------11-----------------------------------------------111111111---------------11111111111111----------------------------------------------------------- ---------------------------------1-------------------------------------------------------------------------1--22-1----------------------------1--------------1-----11---------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 85.8 SQ:SECSTR HcccccccccTTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHH################## DISOP:02AL 1-3| PSIPRED ccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //