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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sfhB
DDBJ      :sfhB         pseudouridylate synthase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  160/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->322 2istA PDBj 5e-41 33.7 %
:RPS:PDB   17->103 1dm9A PDBj 1e-07 10.5 %
:RPS:PDB   88->318 2ab4A PDBj 1e-28 17.1 %
:RPS:SCOP  17->103 1dm9A  d.66.1.3 * 6e-08 10.5 %
:RPS:SCOP  84->323 1v9kA  d.265.1.3 * 8e-58 31.1 %
:HMM:SCOP  17->117 1c06A_ d.66.1.2 * 8.9e-13 25.0 %
:HMM:SCOP  73->322 1przA_ d.265.1.3 * 6.8e-68 38.9 %
:RPS:PFM   91->249 PF00849 * PseudoU_synth_2 8e-27 43.2 %
:HMM:PFM   90->250 PF00849 * PseudoU_synth_2 3.7e-40 31.2 157/164  
:HMM:PFM   17->63 PF01479 * S4 2.1e-10 29.8 47/48  
:BLT:SWISS 49->321 RLUD_ZYMMO 1e-62 47.1 %
:PROS 137->151|PS01129|PSI_RLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21428.1 GT:GENE sfhB GT:PRODUCT pseudouridylate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(593396..594376) GB:FROM 593396 GB:TO 594376 GB:DIRECTION - GB:GENE sfhB GB:PRODUCT pseudouridylate synthase GB:PROTEIN_ID AAZ21428.1 GB:DB_XREF GI:71062425 GB:GENE:GENE sfhB LENGTH 326 SQ:AASEQ MEKNINLIVGEDENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVLSGDEINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTSILPQELENILVLLRNTGK GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 49->321|RLUD_ZYMMO|1e-62|47.1|261/317| PROS 137->151|PS01129|PSI_RLU|PDOC00869| SEG 34->46|iknlilkeklkin| SEG 261->270|kykkkykklk| BL:PDB:NREP 1 BL:PDB:REP 9->322|2istA|5e-41|33.7|300/321| RP:PDB:NREP 2 RP:PDB:REP 17->103|1dm9A|1e-07|10.5|86/104| RP:PDB:REP 88->318|2ab4A|1e-28|17.1|193/300| RP:PFM:NREP 1 RP:PFM:REP 91->249|PF00849|8e-27|43.2|146/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 90->250|PF00849|3.7e-40|31.2|157/164|PseudoU_synth_2| HM:PFM:REP 17->63|PF01479|2.1e-10|29.8|47/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 17->103|1dm9A|6e-08|10.5|86/104|d.66.1.3| RP:SCP:REP 84->323|1v9kA|8e-58|31.1|222/227|d.265.1.3| HM:SCP:REP 17->117|1c06A_|8.9e-13|25.0|100/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 73->322|1przA_|6.8e-68|38.9|239/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2889 OP:NHOMOORG 1068 OP:PATTERN --------------------------------------11111------------------------- 2121122233331212111-11111111111111112211122111211111121211111111111111111111112111111222444414-311122223234424-2222222-211114111111111112221111131223233311223313323212222113111113111121311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333333333333332333333333333343333333334332342133141121212223133213233322222333222333322322222222223-3233333322322332222222223344333333333333333333332233342222222223311222222222222221222333332222222232222222222222222222222222322243424433422333322244343333422225481324361223221223233442466769422333233333323233333334223322655543646735888889866689-9889A2-3222322122244444554444444444-44444444444444444445554444544444444444444445444444431544444444444222522222222233635555455454554445555455434435444433333-33333332222222225777566666667664433333333222222444432332223222241211112-22122222222122222222222222222242 -1--122-3111221111111111111---------1111111---111111111111111121222211232222322322222211-13212121-11-2121-11633211-----1113-23-21493-312-1--3111-111-121-312--2-12322214112-1112112E647-23237163B871114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 321 STR:RPRED 98.5 SQ:SECSTR ##cccTTTHHHHcccEEHHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEcccccccTTccccGGGEccHHHHHccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHTTccEEEEETcccEEEcccccTTcEEEEEEEEGGGGGGHHHGGGGGTTccEEEEEEEEETEEETTccTTTTcEEEEEccccccccccccccHHHHHHTTcccccccEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEETTEEGGGcccHEEEEEEETTEETTTcccTTTccHHHHHHHcEEGGGccEHHHc### DISOP:02AL 325-326| PSIPRED cccEEEEEEcccccccHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEEccccEEccccEEEEEEcccccccccccccccEEEEEccEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEEEEEEEccccEEEEEccccccccccEEEEEccccccccccEEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHccccEEcccccccccccccccccHHHHHHHcccHHHHHHHHEEEEccccccEEEEEccccHHHHHHHHHHHHHcc //