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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : smc
DDBJ      :smc          chromosome segregation protein SMC family
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  633/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.159.1
:857 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->166 1xexA PDBj 6e-21 31.9 %
:BLT:PDB   354->521 1fyhA PDBj 9e-06 27.4 %
:BLT:PDB   703->852 1xewY PDBj 2e-29 41.4 %
:RPS:PDB   1->58,741->849 1e69A PDBj 6e-14 49.1 %
:RPS:PDB   362->481 2ebfX PDBj 2e-05 8.5 %
:RPS:PDB   630->703 3cmwA PDBj 2e-04 17.6 %
:RPS:SCOP  4->208 1w1wA  c.37.1.12 * 1e-20 21.6 %
:RPS:SCOP  313->390 1ho5A2  d.159.1.2 * 9e-05 9.2 %
:RPS:SCOP  664->849 1w1wA  c.37.1.12 * 9e-33 28.5 %
:HMM:SCOP  1->854 1w1wA_ c.37.1.12 * 2.3e-74 29.9 %
:RPS:PFM   4->390 PF02463 * SMC_N 1e-42 33.0 %
:RPS:PFM   573->836 PF02463 * SMC_N 3e-38 42.6 %
:HMM:PFM   4->842 PF02463 * SMC_N 8.1e-45 34.7 216/220  
:BLT:SWISS 1->436 SMC2_HUMAN 3e-19 22.6 %
:BLT:SWISS 430->540 FMNL2_MOUSE 6e-08 32.4 %
:BLT:SWISS 573->700 MYO4_CAEEL 3e-04 25.4 %
:BLT:SWISS 694->856 YAT3_RHORU 2e-49 55.8 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20938.1 GT:GENE smc GT:PRODUCT chromosome segregation protein SMC family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 124499..127072 GB:FROM 124499 GB:TO 127072 GB:DIRECTION + GB:GENE smc GB:PRODUCT chromosome segregation protein SMC family GB:PROTEIN_ID AAZ20938.1 GB:DB_XREF GI:71061935 GB:GENE:GENE smc LENGTH 857 SQ:AASEQ MEFKKIQLNGFKSFAEKTNFLIEHGLTGIVGPNGCGKSNIVESLRWVMGETSAKSMRGSGMEDVIFNGTSNKSSKNIAEVSISVDNASHDGPMQYKDLDHIEVRRKIEKDKGSKFYINDKEVRARDAQMFFADLSTGAHSPSMISQGRIGALVTAKPTDRRAILEEAANISGLHVRRHEAELRLNAAETNLKRADELRRQQEKQLANLQKQAEEATKYKLISEEIKKIEAGLYYLKLLDIDNEIRIENEINNEAEGEVSNFNQQIAQFENLIKTETDKVSPLREKNIENLSKIQRLNLELQNLDEENVRTQDEIENIKKSLKTIEEDIDREKGIVIDANSNERRLKEEKAELIEIDSKYFETEKLSNEDLEKAKNLLKDEQKSVDEIINIFADGNINIAIGPIKNVKNTITRAKELINNNEINQALTLLDRCQIEIDGFLDNLEDEESKKKLSNINEKNENIKLLQEKYADSFSKNQSIKKESVKRNERIKAIESEVESWKNLLSNSEKMVTELTERKNKLLSQLNERDQQPKAQAERKGQITEGLRISQNEKIENEKIIEETDKKINSLRLELNDVQERSIQIRERKASSGATVEGLKKRKEDLLERVSSELNLEENDILENSNLNGVEELPDSVAQEDALDKKKNEREKLGSVNLRADEETSKYEIEIKKMEQDREDLVSAIIKLKESINELNQKGRERLLEAFEKVNRKFNEVYTKLFNGGNAKLELVDSDDPLEAGLEMLVSPPGKRLQSITLLSGGEQALTALSLIFAVFLTNPSPICVLDEVDAPLDDANVTRFCGLLDDLTKITDTKFIIVTHHALTMSKMNRLYGVTMPEKGISQLVAVDLQKAESMVA GT:EXON 1|1-857:0| BL:SWS:NREP 4 BL:SWS:REP 1->436|SMC2_HUMAN|3e-19|22.6|424/1197| BL:SWS:REP 430->540|FMNL2_MOUSE|6e-08|32.4|111/1086| BL:SWS:REP 573->700|MYO4_CAEEL|3e-04|25.4|122/1966| BL:SWS:REP 694->856|YAT3_RHORU|2e-49|55.8|163/173| COIL:NAA 227 COIL:NSEG 6 COIL:REGION 171->220| COIL:REGION 288->343| COIL:REGION 349->353| COIL:REGION 488->531| COIL:REGION 551->589| COIL:REGION 665->697| SEG 239->253|didneirieneinne| SEG 296->307|lnlelqnldeen| SEG 551->568|nekienekiieetdkkin| SEG 610->627|sselnleendilensnln| BL:PDB:NREP 3 BL:PDB:REP 4->166|1xexA|6e-21|31.9|160/166| BL:PDB:REP 354->521|1fyhA|9e-06|27.4|146/242| BL:PDB:REP 703->852|1xewY|2e-29|41.4|145/160| RP:PDB:NREP 3 RP:PDB:REP 1->58,741->849|1e69A|6e-14|49.1|164/263| RP:PDB:REP 362->481|2ebfX|2e-05|8.5|118/711| RP:PDB:REP 630->703|3cmwA|2e-04|17.6|74/1609| RP:PFM:NREP 2 RP:PFM:REP 4->390|PF02463|1e-42|33.0|382/536|SMC_N| RP:PFM:REP 573->836|PF02463|3e-38|42.6|261/536|SMC_N| HM:PFM:NREP 1 HM:PFM:REP 4->842|PF02463|8.1e-45|34.7|216/220|SMC_N| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 3 RP:SCP:REP 4->208|1w1wA|1e-20|21.6|179/274|c.37.1.12| RP:SCP:REP 313->390|1ho5A2|9e-05|9.2|76/337|d.159.1.2| RP:SCP:REP 664->849|1w1wA|9e-33|28.5|179/274|c.37.1.12| HM:SCP:REP 1->854|1w1wA_|2.3e-74|29.9|411/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1595 OP:NHOMOORG 870 OP:PATTERN -----------------------111111111---111111111111111111-11111111111-11 1111111111111111111-11111111111111111111111111-111111111-1--111-1111111----1111111111111-----------------11-1---------------111111111-1111111---11111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111121111111111112111111111111111111111111111111111111111111111111111111121112111111111111111111-11-1-111111111-111111111-----111111111111111111111111---1-11--111-1111111111111111111111111111111111111111111-----------------------------11111-1111111111111111111111111111111111111-11111111111111111111111111111111111-1-----------111111111111111---------------------------1111-111-111-1111111111111111121--11111--------------------------------------------------------------------------------------------11111111111111----------------11111111111111111111111111111------------------------11111111111111---11111111111111111-----1-11111111111111111111111111111-1- 3334522-B4423343334444444444434554444444445444243344244444443344444414445433524444444534-46433444444423344343446858843312453993A1Ea817594332525572434472253A34559T343545558H7324234X4433335463414334564 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 651 STR:RPRED 76.0 SQ:SECSTR cEEEEEEEEccTTccccEEEEccccEEEEEccTTTccTHHHHHHHHTcccccTTccccccHHHHHHcHHHHHHHHHHHTHHHHHTTTccccccccHHHHHHHHHHHTTTEEEEEEEccHHHHHHHHHHHTcccccccHHHHHHHHTcccHHcEEEEETcHHHHHHHHHHHHHHGGccc#################################################################################GGGGcTHHHHHHccccccTTcccGGGTTHHHHHcccccc############TccccHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHcTTHHHHTTcccHHHHHHHTccTTccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcTTcTTHHHHHHHHHHccHHHHHccGGGHHHHHHHHHcccTTccHHHHHHHHHHHHHHTccHHTTTccTTEEEETTEEEEccHHHHTTcETTcHHHHHHHH############################################################################################################ccccccEEEEEEETTTEEcHHHHHHHHHHHTTcTTEEEETTEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcTTcEEEEEEccGGGGGGHHcccEEEcTTcccccGGGccHHHHHHHHHHHHHHHTTTccccEEEEEcccccccHHHHHHHHHHHHHHTTGGTcEEEEEcccTTGGGGccEEEEEEETccccEEEEEcccHHH##### DISOP:02AL 55-70, 261-272, 366-368, 442-443, 754-755| PSIPRED cEEEEEEEEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHHHHHHccccHHccHHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccEEEEEEEEEEcccEEEEEccEEccHHHHHHHHHHHcccccccHHEEccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEEEccccccccHHHccccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHcccEEEEEEEccccEEEEEEcHHHHHHHHc //