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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : soxA2
DDBJ      :soxA2        sarcosine oxidase alpha chain
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  599/915 : Eukaryota  137/199 : Viruses  0/175   --->[See Alignment]
b.44.2c.107.1c.3.1c.4.1d.15.4d.250.1
:998 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->995 2gagA PDBj e-161 38.1 %
:RPS:PDB   167->527 3dk9A PDBj 3e-09 14.3 %
:RPS:SCOP  1->63 1kf6B2  d.15.4.2 * 3e-05 13.3 %
:RPS:SCOP  172->273 1ps9A3  c.4.1.1 * 5e-10 20.6 %
:RPS:SCOP  292->373 1ir6A  c.107.1.2 * 4e-04 14.6 %
:RPS:SCOP  608->896 1pj5A4  d.250.1.1 * 2e-73 29.6 %
:RPS:SCOP  903->997 1pj5A1  b.44.2.1 * 8e-09 14.0 %
:HMM:SCOP  168->374 1ojtA1 c.3.1.5 * 6.7e-23 23.3 %
:HMM:SCOP  607->895 1pj5A4 d.250.1.1 * 1.2e-85 39.4 %
:HMM:SCOP  894->999 1vloA1 b.44.2.1 * 3.1e-09 24.5 %
:RPS:PFM   171->220 PF00890 * FAD_binding_2 5e-06 44.0 %
:RPS:PFM   663->879 PF01571 * GCV_T 2e-30 34.6 %
:HMM:PFM   661->876 PF01571 * GCV_T 5.1e-55 36.7 207/211  
:HMM:PFM   884->984 PF08669 * GCV_T_C 1.2e-10 23.7 93/95  
:HMM:PFM   171->211 PF00890 * FAD_binding_2 1.1e-08 39.0 41/421  
:BLT:SWISS 4->996 SOXA_RHIME 0.0 43.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22086.1 GT:GENE soxA2 GT:PRODUCT sarcosine oxidase alpha chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1214306..1217302) GB:FROM 1214306 GB:TO 1217302 GB:DIRECTION - GB:GENE soxA2 GB:PRODUCT sarcosine oxidase alpha chain GB:PROTEIN_ID AAZ22086.1 GB:DB_XREF GI:71063083 GB:GENE:GENE soxA2 LENGTH 998 SQ:AASEQ MTQNYRLDNVGLINRDKKISFKFNGVTYFGYEGDTLASALLANGVHLIGRSFKYHRPRGFFGAGVDEPYAIVQLYRNNETEPNVKATEQELFEGLEATSVNCWPSVNFDIGAINNLLKIFLPAGFYYKTFMWPKSFWYKVYEPFIRKAAGLGVASIEHDKERYEHKYEYCDLLIAGSGPSGLASAYAAAKNGARVILAEDKPRFGGTLLTSEVNIGNQTGKEWAENIISELKEMPNVIVKNRSQVFGYYDHNMLVMSEKLSDHLPKTKKYNPKQRLWYIRAKEVLISSGSIERPLVFGNNDTPGVMLSSAAKEYLKVYGVLVGKKPLIFTNNDSGYETAIEFKINGVDPIILDTRKEPKSEIIDEAKKLDIEIKFSYVVVAAKGYKKVKSAEVAKISDDKNELGTLENINCDCICVSGFWTPTIHLASQSGNKTTFNKDIDAFVPGLSKQNETTLGAANGTFTLEETLKSSFETGYELSKKITNNDNKTSSPTVMEKKSTTHDKFWCVPLPKGKTYKRFLDFQNDVAVSDVEIALKEGYRSIEHVKRYTTLGMATDQGKTSNLNGLQLVSNIENKIVPEVGHTTFRPPYTPVTIGAIVGREVGKHSKPTRKSPMHTWHEKNNAVFVDAGVWLRPRYYKIGEETLFEGSKREAKNVRTNVGVCDVTTLGKIDIKGPDAAELLNRVYTNAWLKLPVGKARYGVMLREDGIVMDDGTTTRISENHYHMTTTTAQAANVLSHLEYYLQLVWPELNVNVVSTTEQWAGAAIAGPKSRDLLQKLFPNIDASNEGLPFMGYLEADLFGVHARIFRISFSGELAYEVNVESDNGNFMWEKIMEVGQEFKIQPYGTEALSTLRIEMGHIAGSELDGRTIPYDNSLEGLVSKKKDFIGKRSLEREAFIAEDRQKVVGVVPIDKKTSIPEGSHLVKDAMAPTPNPKLGYISASCWSVEYDNPFSLAILKDGKNMIGQKLFAMSPLKNKTIPVEIVSSHYVDPKGERVRS GT:EXON 1|1-998:0| BL:SWS:NREP 1 BL:SWS:REP 4->996|SOXA_RHIME|0.0|43.8|977/987| SEG 377->389|yvvvaakgykkvk| BL:PDB:NREP 1 BL:PDB:REP 13->995|2gagA|e-161|38.1|934/965| RP:PDB:NREP 1 RP:PDB:REP 167->527|3dk9A|3e-09|14.3|350/462| RP:PFM:NREP 2 RP:PFM:REP 171->220|PF00890|5e-06|44.0|50/375|FAD_binding_2| RP:PFM:REP 663->879|PF01571|2e-30|34.6|208/211|GCV_T| HM:PFM:NREP 3 HM:PFM:REP 661->876|PF01571|5.1e-55|36.7|207/211|GCV_T| HM:PFM:REP 884->984|PF08669|1.2e-10|23.7|93/95|GCV_T_C| HM:PFM:REP 171->211|PF00890|1.1e-08|39.0|41/421|FAD_binding_2| GO:PFM:NREP 5 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 5 RP:SCP:REP 1->63|1kf6B2|3e-05|13.3|60/105|d.15.4.2| RP:SCP:REP 172->273|1ps9A3|5e-10|20.6|102/179|c.4.1.1| RP:SCP:REP 292->373|1ir6A|4e-04|14.6|82/385|c.107.1.2| RP:SCP:REP 608->896|1pj5A4|2e-73|29.6|287/315|d.250.1.1| RP:SCP:REP 903->997|1pj5A1|8e-09|14.0|86/88|b.44.2.1| HM:SCP:REP 168->374|1ojtA1|6.7e-23|23.3|202/0|c.3.1.5|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 607->895|1pj5A4|1.2e-85|39.4|287/315|d.250.1.1|1/1|Folate-binding domain| HM:SCP:REP 894->999|1vloA1|3.1e-09|24.5|98/100|b.44.2.1|1/1|Aminomethyltransferase beta-barrel domain| OP:NHOMO 1268 OP:NHOMOORG 760 OP:PATTERN 111-21--------1--------141-13-11----------------------22222211111--- 121111-----11111111-13112111111-322211441--11131-11-4322111111311372111----------161----1111-111---1-211111111--------------11111111111111111---1111111111111-1111111111111-111111111-111-1111111111111111111111111111111111111111111111-11111111111111111111-----------------------------------------------------------------------11--1111111-1--122----1---11----22-1-11111111-1--1-11----1111-31221111112111231232223-231332312H1-A554758779AB56---5852222CAI111111112---41-1-----------------------------81121-112212222222211122362222122332321--1133-----1-1-2--112-2--11111-11111111-2-1111111111-1111111-1111121---------------------------1111-1-1411111111111111111111111--11-12------11111111221111111-21-1111111211111111111111111111111111111111111111111-111111111111---1111111--111-22---------------------11113-3333333663433144411111111111111-111111111111-1--1111111111-111111--------1-1-------------------------1111111111111 ----11--1-1---11121111-1111-------------------11-11111-----1--111-11-111111-111111-11111-1--11121111--11---211C444443-1--132551417R31339-21141133211224116232253651533223611323-11--111111--212-122-1-2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 971 STR:RPRED 97.3 SQ:SECSTR ############cEEEEEEEEEETTEEEEEEETccHHHHHHHTTcccccccTTTccccccccccTTccccEEEEccccTTcccEEE#TTcccEEEEGGGccccTTEEEEE#############TcccccTTcccEEEcccccTTcccTcccccccccccTTcHHccEEcccEEEEcccHHHHHHHHHHHHTTccEEEEEccccTTHHHGcccHHHcHHHHHHHHHTTTTTTTcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHTTEccccccEEEEEcccEEEcccEEEccccTTTcTTGGGcccHHHHTTccGGGGccccEEEEEcccHHHHHHHHHHHHTTcEEEEEcccccccTTccHHHHHHTcEEETTEEEEEEEEccccEEEEEEEEccTTcccEEEEEEEEcEEEEcccEEEccTTccGGGGTccccTTccccccTTcccccTTEEEcGGGGcccccHHHHHHHHHHHHHHHHccTTcccccTTccEEEcccccEEEEEccHHHHHHHHcGGGEEEEEEEHHHHHHHTcccHHHHHHHHcTTccTTTTTTTHHHHHHHHHHHTTcccGGTcccccccccccccHHHHHTTccGGGGcccTTccccHHHHHHHHHHHTTccHHHHHHHTcccccccGGGGGcHHHHHHTHHHHHHHHHHHHHHHHccHHHHHHHHcHHccTTccTTcEEEEEEEcTTccEEEEEEEEEEETTEEEEEEcTTTHHHHHHHHHHHHHHTcTTcccEEEEcTTTEEEEEEEcTTHHHHHHHHcTTccccTTTccTTcEEEEEcTccEEEEEccccccccEEEEEEEGGGHHHHHHHHHHHHGGGTcEEccHHHHHHHHHHTTccTTTTccccccTTTTTcGGGcccccccTTGGGGGcHHHHccccEEEEEEEEccTTccccTTcEEETTccccTTccccEEEEEEEEETTTTEEEEEEEEETGGGcTTcEEEEEEEETTEEEEEEEEccccccTTcTTTc# DISOP:02AL 1-10, 598-607, 997-998| PSIPRED cccccccccccEEccccEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccccEEEEccccccccccccEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccHHHcccccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEEcccccccccccHHHHHHHHHHHHHHcccEEEEEccEEEEEEcccEEEEEEEEEEEccccccccccccEEEEEEEEEEEEcccccccccccccccccEEEHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEEEEEcEEEcHHHHHHcccEEEEEcccEEEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccEEEEcccccHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHccEEEEccccEEEEEEcHHHHHHHHHHccccccccccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEcHHHHHHHHHHcccccccHHHccccEEEEEEEccEEEEEEEEcccccccEEEEEcHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHcccccccccccHHccccHHHccccccccHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEEcccccccccEEEEEEEccccccccccEEEEEEEcHHcccccEEEEEEEccccEEEEEEEEccccccccccccc //