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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : soxB2
DDBJ      :soxB2        sarcosine oxidase beta subunit
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  223/915 : Eukaryota  34/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:418 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->410 2gagB PDBj e-116 49.5 %
:RPS:PDB   32->406 1b3mA PDBj 7e-41 15.0 %
:RPS:SCOP  14->53 1vqwA2  c.3.1.5 * 2e-04 15.0 %
:RPS:SCOP  30->296 1ng3A1  c.3.1.2 * 5e-27 19.4 %
:HMM:SCOP  32->400 1pj5A2 c.3.1.2 * 1.2e-48 34.2 %
:RPS:PFM   34->376 PF01266 * DAO 2e-33 31.8 %
:HMM:PFM   34->379 PF01266 * DAO 4.8e-69 32.4 336/358  
:BLT:SWISS 3->414 SOXB_RHIME e-151 61.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22088.1 GT:GENE soxB2 GT:PRODUCT sarcosine oxidase beta subunit GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1217571..1218827) GB:FROM 1217571 GB:TO 1218827 GB:DIRECTION - GB:GENE soxB2 GB:PRODUCT sarcosine oxidase beta subunit GB:PROTEIN_ID AAZ22088.1 GB:DB_XREF GI:71063085 GB:GENE:GENE soxB2 LENGTH 418 SQ:AASEQ MQKYSIFNLIKNAFSGHQNWDLAWKDPTPKKEYDVVIIGGGGHGLATAYYLAKEHNITNVAIIEKGWIGGGNVGRNTTIIRSNYMHDDNALFSEFGMDLWRKMSQDLNYNVMFSPRGIINLAHSDAQMNVFARRGNSMRLNGIDAVLLNREEVKEIIPMADFSDNVRFPIFGGLMQPSAGTARHDAVAWGYARQADSMGVDIIQNCEVTGFDVVGGKIQGVRTSRGDIKVKKIGLCVAGSTNILAEKLNMTVPIETHLLQACVSEPVKPVLDKVVTFGAGHFYISQSDKGEMVMGGDLDGYNSYAQRGNLPTLQHVLTEGIAMMPFLSKLKMLRTWGGIMDMSMDGSPIIDKTHIEGLYLNCGWCYGGFKATPASGWTFAHTIAQDRVHKLNAGYSLNRFHTGHLLDEKGLGTKTWIS GT:EXON 1|1-418:0| BL:SWS:NREP 1 BL:SWS:REP 3->414|SOXB_RHIME|e-151|61.3|411/416| BL:PDB:NREP 1 BL:PDB:REP 21->410|2gagB|e-116|49.5|390/403| RP:PDB:NREP 1 RP:PDB:REP 32->406|1b3mA|7e-41|15.0|366/385| RP:PFM:NREP 1 RP:PFM:REP 34->376|PF01266|2e-33|31.8|333/354|DAO| HM:PFM:NREP 1 HM:PFM:REP 34->379|PF01266|4.8e-69|32.4|336/358|DAO| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| RP:SCP:NREP 2 RP:SCP:REP 14->53|1vqwA2|2e-04|15.0|40/107|c.3.1.5| RP:SCP:REP 30->296|1ng3A1|5e-27|19.4|253/276|c.3.1.2| HM:SCP:REP 32->400|1pj5A2|1.2e-48|34.2|269/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 630 OP:NHOMOORG 279 OP:PATTERN --1-1---1111111111-----12---1-------------------------2222222------- -11------------------1-----------2221-34-------1----2221------1--141--------------3--1--------------------------------------------------11111---13--1---1----------------------------------------------------------------1--2-----------------------------------------------------------------------------------------------------------------------11-----------------1---1------1-----1---------1425------2-24443344447-321223213A--B7764446565672---245222244411111111222-3--------------------------------3-21---222-255242522223366333313146-11-----21-1--115-36----1-12------------1-213-1---1---------------111111-----------------------------------2---1------------1--1---------1-------11---21---1--------11---1-1-----1---111---121--1-1---1----1-1---------11111111-111----------------26---------------1111112-----11113425233211344---------1--------------------------------------------------------------------------111-1-1------ --------------------------------------------------------------------------------------------------------------8332421----1-----315D1-2---------21--------11121-368133--226---11-----------------1----1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 402 STR:RPRED 96.2 SQ:SECSTR ###########HHTTccccccccccTccccTEEEEEEEcccHHHHHHHHHHHHTTcTccEEEEcccccccccccccccEEEEccccTTcTTHHHHHHHHHHHHHHHHHcccccEEcccEEEEEETTccHHHHHHHHHHHHHTcccEEEETHHHHHHcTTccccTccccTTEEEEEETTcEEEEHHHHHHHHHHHHHHTTcEEEccccEEEEcccTTcEEEEEETTEEEEEEEEEEccGGGHHHHGGGGTEEcccEEEEEEEEEEcccHHHHcGGGTcTTEEEEEEcccTTccEEEEEccccEEccTTTccccHHHHHHHHHHHcGGGcHccEEEEEEEEEEEcTTcccEEEEETEEEEEEEEccTTccGGGHHHHHHHHHHHHHHcccccccGGGcTTcGGGccEEccTTccc##### DISOP:02AL 1-2| PSIPRED ccccccHHHHHHHcccccccccccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccEEEEEccHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHcccccccccccccEEEEEEEccccEEcHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEccEEEEEEEEEEEccccHHHHHHHcccEEEEEEEEEEEEEcccccccccccEEEcccEEEEEEccccEEEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccHHHHccccccccc //