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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : soxD
DDBJ      :soxD         sarcosine oxidase delta chain
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  104/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:91 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->89 1vrqD PDBj 4e-29 58.4 %
:RPS:PFM   3->86 PF04267 * SoxD 2e-28 57.1 %
:HMM:PFM   3->85 PF04267 * SoxD 1.7e-39 56.6 83/84  
:BLT:SWISS 1->89 SOXD_CORS1 2e-28 56.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21870.1 GT:GENE soxD GT:PRODUCT sarcosine oxidase delta chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1033166..1033441 GB:FROM 1033166 GB:TO 1033441 GB:DIRECTION + GB:GENE soxD GB:PRODUCT sarcosine oxidase delta chain GB:PROTEIN_ID AAZ21870.1 GB:DB_XREF GI:71062867 GB:GENE:GENE soxD LENGTH 91 SQ:AASEQ MFLITCPFCGEREQSEFKAGGEAHIERPKQPTELSDDEWAEYLFMRKNIKGIQFERWNHAHGCRKWFNMVRDTSNDQIKAVYKMGEKPPIK GT:EXON 1|1-91:0| BL:SWS:NREP 1 BL:SWS:REP 1->89|SOXD_CORS1|2e-28|56.2|89/98| BL:PDB:NREP 1 BL:PDB:REP 1->89|1vrqD|4e-29|58.4|89/91| RP:PFM:NREP 1 RP:PFM:REP 3->86|PF04267|2e-28|57.1|84/84|SoxD| HM:PFM:NREP 1 HM:PFM:REP 3->85|PF04267|1.7e-39|56.6|83/84|SoxD| GO:PFM:NREP 2 GO:PFM GO:0008115|"GO:sarcosine oxidase activity"|PF04267|IPR006279| GO:PFM GO:0046653|"GO:tetrahydrofolate metabolic process"|PF04267|IPR006279| OP:NHOMO 138 OP:NHOMOORG 104 OP:PATTERN -------------------------------------------------------------------- --------------------------------------11------------1111---------12---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------1------1-11111111111-22-2222115--33322222222222---1111111111--------1---2--------------------------------2--1----11-1111111----11111111-1121-1------2----------1----1-1--------------------------------------------------------------------------------2---------------------------------------------------------------------------------------------------------------------------------------11---------------------------1111111111211-111------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 89 STR:RPRED 97.8 SQ:SECSTR ccEEEETTTEEEEGGGcEEEEEccccccccGGGccHHHHHHHHHcccccccEEEEEEEcTTTTccEEEEEEETTTccEEEEEETTcccc## DISOP:02AL 86-87, 89-91| PSIPRED ccEEEccccccccccccccccccccccccccccccHHHHHHHccccccccccHHEEEEccccccEEEEEEEccccEEEEEEEccccccccc //