[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : soxD2
DDBJ      :soxD2        sarcosine oxidase delta chain
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  103/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:88 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->86 1vrqD PDBj 3e-19 40.7 %
:RPS:PFM   4->86 PF04267 * SoxD 2e-21 43.4 %
:HMM:PFM   3->85 PF04267 * SoxD 1.1e-37 49.4 83/84  
:BLT:SWISS 1->86 SOXD_CORS1 1e-19 43.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22087.1 GT:GENE soxD2 GT:PRODUCT sarcosine oxidase delta chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1217304..1217570) GB:FROM 1217304 GB:TO 1217570 GB:DIRECTION - GB:GENE soxD2 GB:PRODUCT sarcosine oxidase delta chain GB:PROTEIN_ID AAZ22087.1 GB:DB_XREF GI:71063084 GB:GENE:GENE soxD2 LENGTH 88 SQ:AASEQ MLHIKCPHCGMRSQNEFSYGGDATVKRPELNKEVSDQDWDNFVYNRKSLRGKHKELWQHISGCRQWIKIERDTATHEIFKTVKASEDI GT:EXON 1|1-88:0| BL:SWS:NREP 1 BL:SWS:REP 1->86|SOXD_CORS1|1e-19|43.0|86/98| BL:PDB:NREP 1 BL:PDB:REP 1->86|1vrqD|3e-19|40.7|86/91| RP:PFM:NREP 1 RP:PFM:REP 4->86|PF04267|2e-21|43.4|83/84|SoxD| HM:PFM:NREP 1 HM:PFM:REP 3->85|PF04267|1.1e-37|49.4|83/84|SoxD| GO:PFM:NREP 2 GO:PFM GO:0008115|"GO:sarcosine oxidase activity"|PF04267|IPR006279| GO:PFM GO:0046653|"GO:tetrahydrofolate metabolic process"|PF04267|IPR006279| OP:NHOMO 145 OP:NHOMOORG 103 OP:PATTERN -------------------------------------------------------------------- --------------------------------------11------------1111---------12---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1--1------1-11111111111-22-2222115--33322222222222---2221111333--------1---2--------------------------------2--1----11-1111111----11111111-1121-1------2----------1---------------------------------------------------------------------------------------2---------------------------------------------------------------------------------------------------------------------------------------11---------------------------1111111111111-111------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 86 STR:RPRED 97.7 SQ:SECSTR ccEEEETTTEEEEGGGcEEEEEccccccccGGGccHHHHHHHHHcccccccEEEEEEEcTTTTccEEEEEEETTTccEEEEEETTc## DISOP:02AL 88-89| PSIPRED ccEEEccccccccHHHcccccccccccccccccccHHHHHHHHHHcccccccEEEEEEEEcccccEEEEEEccccEEEEEEEEHHHcc //