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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : speB
DDBJ      :speB         agmatinase
Swiss-Prot:             

Homologs  Archaea  63/68 : Bacteria  413/915 : Eukaryota  157/199 : Viruses  0/175   --->[See Alignment]
c.42.1
:321 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->318 1gq6B PDBj 3e-53 37.8 %
:RPS:PDB   40->312 2ef4A PDBj 3e-62 29.3 %
:RPS:SCOP  19->312 1wogA  c.42.1.1 * 7e-78 31.4 %
:HMM:SCOP  5->323 1xfkA_ c.42.1.1 * 1.6e-94 43.6 %
:RPS:PFM   40->311 PF00491 * Arginase 7e-55 47.5 %
:HMM:PFM   40->312 PF00491 * Arginase 4.9e-90 42.6 263/274  
:BLT:SWISS 1->317 GBH_ARTS8 7e-99 53.7 %
:PROS 244->265|PS01053|ARGINASE_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22133.1 GT:GENE speB GT:PRODUCT agmatinase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1264679..1265644) GB:FROM 1264679 GB:TO 1265644 GB:DIRECTION - GB:GENE speB GB:PRODUCT agmatinase GB:PROTEIN_ID AAZ22133.1 GB:DB_XREF GI:71063130 GB:GENE:GENE speB LENGTH 321 SQ:AASEQ MKKERNKNPVQPISGTKVPRFAGPSTFARLPELRDVESCDVAIVGIPFDAGTSYRAGARFGPMSIRQASRHLRTNYHPSYDVEPFKVQQVADAGDITCNPFNIDEAIKQIEEGATELLDKVGGIISLGGDHTIALPLLRAINKMNNGPVALVHFDAHLDTWDTYFGAPYTHGTPFRRAREENLFLDDASMHVGIRGPLYSRDDIKNDEEFGFKIIHCDEFQTQGTDKIAERIRKRVGNNPLYLSIDIDVLDPAFAPGTGTPEIAGMTTREMVNVIRGLSGLNLISADVVEVSPAYDHAEVTSLAAATIVYELTNLFAKVKR GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 1->317|GBH_ARTS8|7e-99|53.7|315/353| PROS 244->265|PS01053|ARGINASE_1|PDOC00135| BL:PDB:NREP 1 BL:PDB:REP 19->318|1gq6B|3e-53|37.8|296/301| RP:PDB:NREP 1 RP:PDB:REP 40->312|2ef4A|3e-62|29.3|259/282| RP:PFM:NREP 1 RP:PFM:REP 40->311|PF00491|7e-55|47.5|255/266|Arginase| HM:PFM:NREP 1 HM:PFM:REP 40->312|PF00491|4.9e-90|42.6|263/274|Arginase| GO:PFM:NREP 2 GO:PFM GO:0016813|"GO:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"|PF00491|IPR006035| GO:PFM GO:0046872|"GO:metal ion binding"|PF00491|IPR006035| RP:SCP:NREP 1 RP:SCP:REP 19->312|1wogA|7e-78|31.4|287/303|c.42.1.1| HM:SCP:REP 5->323|1xfkA_|1.6e-94|43.6|307/0|c.42.1.1|1/1|Arginase/deacetylase| OP:NHOMO 1140 OP:NHOMOORG 633 OP:PATTERN 2211112222222221121211113112-111111111111111111--1111-11112132112-11 -2-111-1-------------3---4------4666-112--111-------211111----2--121111-----------2----------1-----21--221---1--------------------------1--21---131-2---211--21211222--1111111111111111111111112323333323333333333211233332121112------3112222222222222211112---------------------------------1--------------------------1---------1221--------1-11111-111121--1---1221111-2111111--1---------------11--------22222222222-1111111-13--411423444422111--1322122326--------1----1-------------------------------2---1-1221-2225221111-22322222-242211-1--322-1---111211-------11111111112---1311-11111--11--2-2---1--211113111---------------------------1----21-11-----1-1----1-11-11---1---------11--1111111111111-1111111111111111111222--1111111111111111111211111111-------------11--11111------11---------------1------1-11--2222222132321---------------11-1111111211----------------1-----------------1-------------------------------1------ ------1-1---11243444335554533-323222443333321144343434334-1444223133-211422--1--333234-4-3623242211-212231-1-123522111111212332414E3-42621214223223213311133213564-4411-1--112-----7-----21224211-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 303 STR:RPRED 94.4 SQ:SECSTR ##################cTTcccccGGGGcccccGGGcEEEEEEEcccccccHcccGGGHHHHHHHTTHHHHHHHHHTcEEEEEEEccccEEEEccccccccTHHHHHHHHHHHHTccTTEEEEEEEccGGGHHHHHHHHTTTcccccEEEEEccccccccTTTccccGGGcHHHHHTTcccHHGGGEEEEEEccccccHHHHHHHHHHTcEEEEHHHHHHHcHHHHHHHHHHHTTTccEEEEEEGGGccTTTcccccccccccccHHHHHHHHHHHHHTcEEEEEEEcccTTTccTTHHHHHHHHHHHHHHHHHHTccT DISOP:02AL 1-13| PSIPRED ccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHcccEEEEHHHHHHccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcc //