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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : speC
DDBJ      :speC         Lysine/ornithine decarboxylase
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  223/915 : Eukaryota  135/199 : Viruses  1/175   --->[See Alignment]
b.49.2c.1.6
:392 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->376 2oo0B PDBj 2e-22 30.1 %
:RPS:PDB   7->364 1d7kA PDBj 2e-32 23.1 %
:RPS:SCOP  35->263 1d7kA2  c.1.6.1 * 5e-29 27.5 %
:RPS:SCOP  255->374 1knwA1  b.49.2.3 * 4e-14 16.2 %
:HMM:SCOP  17->263 1twiA2 c.1.6.1 * 1.8e-44 32.2 %
:HMM:SCOP  225->392 1f3tA1 b.49.2.3 * 8.9e-31 30.0 %
:RPS:PFM   42->261 PF02784 * Orn_Arg_deC_N 2e-09 30.5 %
:HMM:PFM   26->261 PF02784 * Orn_Arg_deC_N 5.1e-41 30.1 229/251  
:HMM:PFM   273->368 PF00278 * Orn_DAP_Arg_deC 1.6e-17 26.9 93/116  
:BLT:SWISS 1->376 DCLO_SELRU 9e-27 27.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21026.1 GT:GENE speC GT:PRODUCT Lysine/ornithine decarboxylase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 205872..207050 GB:FROM 205872 GB:TO 207050 GB:DIRECTION + GB:GENE speC GB:PRODUCT Lysine/ornithine decarboxylase GB:PROTEIN_ID AAZ21026.1 GB:DB_XREF GI:71062023 GB:GENE:GENE speC LENGTH 392 SQ:AASEQ MQKFKTVDELINQLKPEKPIYCIRKKSIQSASTYFRNKFPGKVLYAVKTNSHPEVLKTIVESGIENFDVASIQEIKDIRAISPDAKCSYMHTVKSRESIKEAYFNYNIKAFSLDTKDELIKIIEATNQAKDLELFVRVAVSNEHAEIDLSKKFGVLTSEATGLLRLTKQYAKKIGLSFHVGSQCMHPISYAKGIGEIGNIIKKTKIIPDYINIGGGFPAIYPNLVPQPLENYFEEIKKSLTNLELEKLPELLCEPGRAIVAESGSTIVRVNLRKKQKLYINDGTYGTLFDAGTPNMVYPSRLIKSSKIISKKLTAFDFYGPTCDSMDYMKGPFLLPNNIKENDYIELGQLGAYGLTFRTQFNGFYSNEIYDVEDEPIMTMYGKDSNKAILVA GT:EXON 1|1-392:0| BL:SWS:NREP 1 BL:SWS:REP 1->376|DCLO_SELRU|9e-27|27.8|363/393| SEG 192->207|kgigeigniikktkii| SEG 240->254|ltnleleklpellce| SEG 303->312|iksskiiskk| BL:PDB:NREP 1 BL:PDB:REP 45->376|2oo0B|2e-22|30.1|319/418| RP:PDB:NREP 1 RP:PDB:REP 7->364|1d7kA|2e-32|23.1|350/411| RP:PFM:NREP 1 RP:PFM:REP 42->261|PF02784|2e-09|30.5|213/249|Orn_Arg_deC_N| HM:PFM:NREP 2 HM:PFM:REP 26->261|PF02784|5.1e-41|30.1|229/251|Orn_Arg_deC_N| HM:PFM:REP 273->368|PF00278|1.6e-17|26.9|93/116|Orn_DAP_Arg_deC| GO:PFM:NREP 1 GO:PFM GO:0003824|"GO:catalytic activity"|PF02784|IPR000183| RP:SCP:NREP 2 RP:SCP:REP 35->263|1d7kA2|5e-29|27.5|222/240|c.1.6.1| RP:SCP:REP 255->374|1knwA1|4e-14|16.2|117/174|b.49.2.3| HM:SCP:REP 17->263|1twiA2|1.8e-44|32.2|245/0|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 225->392|1f3tA1|8.9e-31|30.0|150/0|b.49.2.3|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 466 OP:NHOMOORG 365 OP:PATTERN -------------------------------------------11-----111-----------1--- ------------------------------------1---------------------------112-1--------------22---11111112-----------------------------11111--1211----------------------------------------------------------------------------------------------------------------1111--------------------------------------------------------------------------------------------------------------------------21111111111111111122111111111111111-11111111222-111111111111122111111111-11111111111111-231-----------------------------1111111----------------------------------11--------------------1--1-1-1111---111-------1-------------------1--11-1------1--1------1--1--221-1-11--21111111-111111--1-----------------------------------------------------------------------------------------------------111111----1---1---1---1111-11----1--111-1-111111121111111221-1-1111-1------------11--------------------------------1---------------------------111111111111- 11--11--2--111-11--12312121111111111111112111121111111-11-1----11-11-1-1-111--1--11-111-----1---111-1--1-2-1-1-13321311-11214217179212351-1-41142112-12213-2113--114-1-243-2115-11----------1---211111- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 377 STR:RPRED 96.2 SQ:SECSTR ######HHHHHTTccccccEEEEEHHHHHHHHHHHHHHcTTEEEEEEGGcccHHHHHHHHHHTccEEEEccHHHHHHHHTTTccGGEEEccccccHHHHHHHHHHTTccEEEEccHHHHHHHHHHHHHcTTcEEEEEcccccccccccccccccccHHHHHHHHHHHHHTTcEEEEEccccTTcccTHHHHHHHHHHHHHHHHHTccccEEEcccccccccccccHHHHHHHHHHHHHHTTHccGGGccEEEEcccHHHHGGGEEEEEEEEEEEEEcccccccEEEEEEcccHHHHHccccEEcccccTTccEEEEEEEcccccTTcEEEEEEEEEccccTTcEEEEcccccccGGGcccGGGccTccHHHHEEHHHHHcccT######### DISOP:02AL 1-2| PSIPRED cccHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHccccEEEEcHHHHHHHHHccccccEEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccHHHcccEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccEEEccccccccccEEEEEEEcccccccEEEEEEEcccccccccEEEEEccccHHccEEccccccccccEEEEEcccEEEEEEEccHHHHHcc //