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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : speE
DDBJ      :speE         Spermine/spermidine synthase
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  143/915 : Eukaryota  15/199 : Viruses  1/175   --->[See Alignment]
c.66.1d.156.1
:346 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->109 2iiiA PDBj 6e-12 34.3 %
:BLT:PDB   122->336 2hteB PDBj 2e-13 31.7 %
:RPS:PDB   37->340 3c6kC PDBj 2e-28 19.8 %
:RPS:SCOP  119->338 1inlA  c.66.1.17 * 7e-21 16.7 %
:HMM:SCOP  2->109 1tluA_ d.156.1.2 * 3e-25 38.0 %
:HMM:SCOP  109->334 2o07A1 c.66.1.17 * 1e-36 30.9 %
:RPS:PFM   7->97 PF02675 * AdoMet_dc 5e-16 39.6 %
:RPS:PFM   133->345 PF01564 * Spermine_synth 3e-17 28.6 %
:HMM:PFM   120->338 PF01564 * Spermine_synth 2.9e-37 31.8 217/246  
:HMM:PFM   7->110 PF02675 * AdoMet_dc 3.9e-31 39.4 104/106  
:BLT:SWISS 4->122 SPEH_PROMA 2e-17 38.7 %
:BLT:SWISS 119->341 SPEE_KORCO 2e-21 27.5 %
:PROS 191->204|PS01330|SPERMIDINE_SYNTHASE_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22017.1 GT:GENE speE GT:PRODUCT Spermine/spermidine synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1158666..1159706) GB:FROM 1158666 GB:TO 1159706 GB:DIRECTION - GB:GENE speE GB:PRODUCT Spermine/spermidine synthase GB:PROTEIN_ID AAZ22017.1 GB:DB_XREF GI:71063014 GB:GENE:GENE speE LENGTH 346 SQ:AASEQ MTKVGEHITLDIIGTTQEYDPSVYENVIRKIAKAAEVTILEISKYKFEPQGFTILALLAESHISFHTFPEKGIISFDFFTCGKVSPSIALDIVKKEFKHKRIVTKAFDRDTKSLYHDIYSSPGLQKSYVVNEVLEDFKSKVGQHIEILDLEQFGKSLFIDNEIQVATNDEVLYSSTFVNAALKLNKDMGTAAIIGGGDGGVARECTSKGFDFIDWYELDPEVVEVCNKHLGSIGNKSTEKNSVKCIWGDAFESIKSVEDDKYDKIFVDLNDDQFCIDLAAKNMDSLIRILKPNGVITAQVGSQDKKPEQVEKWLDVFNKNFGNTTLDRVYIPSFDCSWNFSSSINH GT:EXON 1|1-346:0| BL:SWS:NREP 2 BL:SWS:REP 4->122|SPEH_PROMA|2e-17|38.7|119/123| BL:SWS:REP 119->341|SPEE_KORCO|2e-21|27.5|222/321| PROS 191->204|PS01330|SPERMIDINE_SYNTHASE_1|PDOC01033| SEG 189->200|gtaaiigggdgg| BL:PDB:NREP 2 BL:PDB:REP 4->109|2iiiA|6e-12|34.3|105/119| BL:PDB:REP 122->336|2hteB|2e-13|31.7|205/270| RP:PDB:NREP 1 RP:PDB:REP 37->340|3c6kC|2e-28|19.8|298/346| RP:PFM:NREP 2 RP:PFM:REP 7->97|PF02675|5e-16|39.6|91/106|AdoMet_dc| RP:PFM:REP 133->345|PF01564|3e-17|28.6|210/226|Spermine_synth| HM:PFM:NREP 2 HM:PFM:REP 120->338|PF01564|2.9e-37|31.8|217/246|Spermine_synth| HM:PFM:REP 7->110|PF02675|3.9e-31|39.4|104/106|AdoMet_dc| GO:PFM:NREP 3 GO:PFM GO:0004014|"GO:adenosylmethionine decarboxylase activity"|PF02675|IPR003826| GO:PFM GO:0008295|"GO:spermidine biosynthetic process"|PF02675|IPR003826| GO:PFM GO:0003824|"GO:catalytic activity"|PF01564|IPR001045| RP:SCP:NREP 1 RP:SCP:REP 119->338|1inlA|7e-21|16.7|209/285|c.66.1.17| HM:SCP:REP 2->109|1tluA_|3e-25|38.0|108/117|d.156.1.2|1/1|S-adenosylmethionine decarboxylase| HM:SCP:REP 109->334|2o07A1|1e-36|30.9|223/0|c.66.1.17|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 231 OP:NHOMOORG 191 OP:PATTERN --1-2112-------12212223------------22211111-----------11111112111--- ------------------------------------1---------------------------112----------------11111--------------------------------------------------------11--1-11111221212121------111212222-112-----11-111111111-1-11111111111111-111--1-------111-----------------------------------------------------------------------------------------1----11111111111111-----11--2--31221311--211121----1-----------------1---------------------------1-------------------1------1-1111111111111--1-----------------------------1----------------------------------------11----------------------------------1-----------------------------1------------------------2--------1---------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------1211-1111---------------------------------------------------------------------------1---1-111--- 11----1-1-------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----------511------1-111-11--- -----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 338 STR:RPRED 97.7 SQ:SECSTR ###EEEEEEEEEEcccGGGcccHHEEEEEEEEcccHHHHHHHHHHHHHTTTcEEEEEEcccccEEEEEEcTTEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHccEEEccccccccTTcccccccEEEEEEEEEcccccEEEEEEETTTEEEEEETTEEEEETTcHHHHHHHHTTTTcccccTTcEEEEEEcTTcHHHHHHHTTcccEEEEEEccHHHHHHHHHHcccccccccccTTEEEEEccHHHHHHHHTTccEEEEEEEcccccccccccHHHHHHHHHTEEEEEEEEEEEEETTTcHHHHHHHHHHHTcccccEEEEEEEcGGGccEEEEE##### PSIPRED ccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEcccccEEEEEEccEEEEEEcccccEEEEEEEcccEEEEEEccEEEEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEEcc //