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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : spoIIA
DDBJ      :spoIIA       Sulfate transporter/antisigma-factor antagonist STAS
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  6/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.13.2
:99 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   5->98 1vc1A PDBj 1e-09 27.7 %
:RPS:PDB   1->98 1auzA PDBj 9e-12 22.4 %
:RPS:SCOP  1->98 1vc1A  c.13.2.1 * 1e-12 25.5 %
:HMM:SCOP  1->98 1h4xA_ c.13.2.1 * 4.5e-22 24.5 %
:HMM:PFM   4->96 PF01740 * STAS 1.8e-14 21.5 93/117  
:BLT:SWISS 7->98 RSBV_BACLI 6e-10 23.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20881.1 GT:GENE spoIIA GT:PRODUCT Sulfate transporter/antisigma-factor antagonist STAS GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 66771..67070 GB:FROM 66771 GB:TO 67070 GB:DIRECTION + GB:GENE spoIIA GB:PRODUCT Sulfate transporter/antisigma-factor antagonist STAS GB:PROTEIN_ID AAZ20881.1 GB:DB_XREF GI:71061878 GB:GENE:GENE spoIIA LENGTH 99 SQ:AASEQ MTYKITEEDNISTIFLDGEIDMDKTDEVKGVIFPVIDSGKNVALNLSNVQYMDSSGISVLIESHQKALEKGTKLVIKDVSKSVLKVIMMAKLEQILNLE GT:EXON 1|1-99:0| BL:SWS:NREP 1 BL:SWS:REP 7->98|RSBV_BACLI|6e-10|23.9|92/108| BL:PDB:NREP 1 BL:PDB:REP 5->98|1vc1A|1e-09|27.7|94/110| RP:PDB:NREP 1 RP:PDB:REP 1->98|1auzA|9e-12|22.4|98/116| HM:PFM:NREP 1 HM:PFM:REP 4->96|PF01740|1.8e-14|21.5|93/117|STAS| RP:SCP:NREP 1 RP:SCP:REP 1->98|1vc1A|1e-12|25.5|98/110|c.13.2.1| HM:SCP:REP 1->98|1h4xA_|4.5e-22|24.5|98/111|c.13.2.1|1/1|Anti-sigma factor antagonist SpoIIaa| OP:NHOMO 7 OP:NHOMOORG 6 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------1-------------------------------2-------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 99 STR:RPRED 100.0 SQ:SECSTR ccccEEEETTEEEEcccccccTTHHHHHHHHHHHHHccccEEEEEccccccccTTHHHHHHHHHHHHHHHTccccEEcccTTTTHHHHHHccGGGTccE PSIPRED cEEEEEEEccEEEEEEEEEEEEccHHHHHHHHHHHHHccccEEEEcccccEEcHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccHHHEEcc //