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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : spoU
DDBJ      :spoU         rRNA Methylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  726/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:153 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->151 1mxiA PDBj 1e-29 41.4 %
:RPS:PDB   7->151 3e5yA PDBj 1e-27 34.5 %
:RPS:SCOP  7->151 1j85A  c.116.1.1 * 5e-32 40.7 %
:HMM:SCOP  4->153 1mxiA_ c.116.1.1 * 5.3e-34 32.0 %
:RPS:PFM   7->142 PF00588 * SpoU_methylase 1e-08 27.9 %
:HMM:PFM   6->142 PF00588 * SpoU_methylase 1.3e-33 29.2 137/142  
:BLT:SWISS 7->151 Y766_HAEIN 4e-29 41.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20925.1 GT:GENE spoU GT:PRODUCT rRNA Methylase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 113110..113571 GB:FROM 113110 GB:TO 113571 GB:DIRECTION + GB:GENE spoU GB:PRODUCT rRNA Methylase GB:PROTEIN_ID AAZ20925.1 GB:DB_XREF GI:71061922 GB:GENE:GENE spoU LENGTH 153 SQ:AASEQ MNLRPKIALYEPDIPQNTAAIIRTCACLGADLEIIEPCGFLFSDKRFKRVVMDYMDEKMIRFYQSSDEFFKSKKNERVILLTTKSADSYTDFKFESNDTLLFGRESAGVPDHVHNLIKYRLKIPMMDNKRSLNIASSVAIILSENLRQTNFNK GT:EXON 1|1-153:0| BL:SWS:NREP 1 BL:SWS:REP 7->151|Y766_HAEIN|4e-29|41.4|145/160| BL:PDB:NREP 1 BL:PDB:REP 7->151|1mxiA|1e-29|41.4|145/156| RP:PDB:NREP 1 RP:PDB:REP 7->151|3e5yA|1e-27|34.5|145/156| RP:PFM:NREP 1 RP:PFM:REP 7->142|PF00588|1e-08|27.9|136/143|SpoU_methylase| HM:PFM:NREP 1 HM:PFM:REP 6->142|PF00588|1.3e-33|29.2|137/142|SpoU_methylase| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 7->151|1j85A|5e-32|40.7|145/156|c.116.1.1| HM:SCP:REP 4->153|1mxiA_|5.3e-34|32.0|150/156|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 748 OP:NHOMOORG 741 OP:PATTERN -------------------------------------------------------------------- -----11111111111111-111111111111111111111----11-1---111111-------11----1111111--11-------------------11-------111111111111111---------------------1111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111-111-1111111111111111111111111111111111-11111111111-111111111111111-1-1----------------------11-----------------------------1111111111111111111111111111111111111111111111111111111111111111111111111111111--11111111111111111111----11-111-11111111-1-------1111111111111111111111111111111111111--111-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111----------1----1-111-111111111111111----------111 -----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1116111-121-2-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 145 STR:RPRED 94.8 SQ:SECSTR ######EEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHHTccGGGEEEcccccccccccHHHHHHHHHHHHHHHTTT## DISOP:02AL 1-2, 152-153| PSIPRED ccccccEEEEEcccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHccHHHcEEEEEEccHHHHHHHHccccEEEEEcccccccccccccccEEEEEEcccccccHHHHHHcccEEEEcccccccEEcHHHHHHHHHHHHHHHccccc //