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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : spsA
DDBJ      :spsA         spsA-like glycosyl transferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  3/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.68.1d.81.4
:240 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   50->129 1qztB PDBj 7e-04 30.0 %
:RPS:PDB   1->224 3ckjA PDBj 2e-10 10.0 %
:RPS:SCOP  22->138 2dm9A1  d.81.4.1 * 4e-08 13.8 %
:HMM:SCOP  1->235 1xhbA2 c.68.1.17 * 8.4e-15 20.4 %
:RPS:PFM   6->118 PF00535 * Glycos_transf_2 4e-06 25.9 %
:HMM:PFM   7->136 PF00535 * Glycos_transf_2 1.6e-15 24.8 125/169  
:HMM:PFM   163->225 PF11517 * Nab2 0.00041 23.8 63/107  
:BLT:SWISS 2->219 DPM1_HUMAN 1e-08 28.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21361.1 GT:GENE spsA GT:PRODUCT spsA-like glycosyl transferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 533858..534580 GB:FROM 533858 GB:TO 534580 GB:DIRECTION + GB:GENE spsA GB:PRODUCT spsA-like glycosyl transferase GB:PROTEIN_ID AAZ21361.1 GB:DB_XREF GI:71062358 GB:GENE:GENE spsA LENGTH 240 SQ:AASEQ MKYHFLIMALNEEKNLYKTYKELIDVIKHTNIKNYKIYIIDDGSVDKTFEISQKIKKINKRVILRHNQKNLGIANNVKKFVSTSPNSGKLILISGDNDLSKNIIIKLINASKKSDLVISFFTNREMKGIFRAFLSTMFNLTCCTIFKVYAFYLQGPFVWPLKQLKKIKIFSNGIAYVSEVNIKLLRSGLKFNEISGEMNTGSENSTSIKFKNFIDIFFTIIHLLIEIYVKNKFKKISKRA GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 2->219|DPM1_HUMAN|1e-08|28.2|213/260| BL:PDB:NREP 1 BL:PDB:REP 50->129|1qztB|7e-04|30.0|80/331| RP:PDB:NREP 1 RP:PDB:REP 1->224|3ckjA|2e-10|10.0|220/300| RP:PFM:NREP 1 RP:PFM:REP 6->118|PF00535|4e-06|25.9|108/148|Glycos_transf_2| HM:PFM:NREP 2 HM:PFM:REP 7->136|PF00535|1.6e-15|24.8|125/169|Glycos_transf_2| HM:PFM:REP 163->225|PF11517|0.00041|23.8|63/107|Nab2| RP:SCP:NREP 1 RP:SCP:REP 22->138|2dm9A1|4e-08|13.8|116/118|d.81.4.1| HM:SCP:REP 1->235|1xhbA2|8.4e-15|20.4|230/0|c.68.1.17|1/1|Nucleotide-diphospho-sugar transferases| OP:NHOMO 3 OP:NHOMOORG 3 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 236 STR:RPRED 98.3 SQ:SECSTR ccEEEEEEEcccTTTHHHHHHHHGHHGGGcTTTccEEEEEEccccccHHHHHTTcEEEEHHHHcTTccccccHHHHHHHHHHHccccEEEEccTTEEcccTTHHHHHHHHHHccccccEEEEEEEcccHHHHHTHHHHHHHHcGGGGGcccTTcccEEEEHHHHTTccccccGGGHHHHHHHHHHHHHcGGEEEEEEEcEEccccGGGHHHHHHHHHHHHHHHTccccccEEcccE#### DISOP:02AL 237-240| PSIPRED cEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccEEEEcccccEEEHHHHHHccccccccEEcHHHHHHHHHcccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //