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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : stc
DDBJ      :stc          transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  255/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.4.12d.110.2
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   326->360 2auwB PDBj 2e-05 20.0 %
:RPS:SCOP  67->203 1mkmA2  d.110.2.2 * 6e-09 14.6 %
:RPS:SCOP  309->360 2oa4A1  a.4.12.3 * 7e-07 5.8 %
:HMM:SCOP  326->361 1etoB_ a.4.1.12 * 0.00013 38.9 %
:HMM:PFM   330->360 PF02954 * HTH_8 1.7e-07 58.1 31/42  
:BLT:SWISS 26->252 ACOR_RALEH 5e-24 30.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21094.1 GT:GENE stc GT:PRODUCT transcriptional regulator GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 275137..276219 GB:FROM 275137 GB:TO 276219 GB:DIRECTION + GB:GENE stc GB:PRODUCT transcriptional regulator GB:PROTEIN_ID AAZ21094.1 GB:DB_XREF GI:71062091 GB:GENE:GENE stc LENGTH 360 SQ:AASEQ MPNLTSVEKEFSNLTKKRGFLSSLIDKDIADSWKRCISTGLDPLKKPKRTILSSKELDELKEKNEYIRRLINPELELLYSQIAGTNFMVAYSDSTGSVMDTIYDKTCLKTDVGKIVIPGSIWREEIGGTNGLGQVVTLNKDSIVSGKEHFFESHGKLSCFASPILNHEGKTIGIIDASTDVHSREQHTLALVKLATKSIETKLFINQFKDELILSFHPRQEYLSTNSVGLLAINGDGFVVGSNSNARIMLHGLAPLKNENFNNIFTTSFSSIANELLQNKILKISDHLGSSVFIIKSQNFKKKISKETGIKTYACNNCKGSKFKEERCVLIKSAFIETGNISAASRKLGVSRTTIYKHLK GT:EXON 1|1-360:0| BL:SWS:NREP 1 BL:SWS:REP 26->252|ACOR_RALEH|5e-24|30.4|227/668| RP:PDB:NREP 1 RP:PDB:REP 326->360|2auwB|2e-05|20.0|35/151| HM:PFM:NREP 1 HM:PFM:REP 330->360|PF02954|1.7e-07|58.1|31/42|HTH_8| RP:SCP:NREP 2 RP:SCP:REP 67->203|1mkmA2|6e-09|14.6|137/171|d.110.2.2| RP:SCP:REP 309->360|2oa4A1|7e-07|5.8|52/93|a.4.12.3| HM:SCP:REP 326->361|1etoB_|0.00013|38.9|36/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 443 OP:NHOMOORG 255 OP:PATTERN -------------------------------------------------------------------- --------------1------1--11-----1-1111332--1---------1--------------11-------------------------------------------------------------------1111--------1------------------1-------------------------111111111-111111111111111-11----------2--------------------------------------------------------------------------------------------1-144335445343--332-------------43-111--1-412----------------43211---11---11111111-11-1-1--1---1--122211111122241--2-31111-11111111115331---1-----------------------------1--1---111-4443441----33261111-12342432--12168111344244----3111-----------252--2-21---1------1----234-----1---------------------------211-----1---1111111--111111--111----2---------1----1------------------------------111---------------------1-------------1----111---------------1-2-------------------------4-2222232214444-111-------------11111111111--11111------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 35 STR:RPRED 9.7 SQ:SECSTR #####################################################################################################################################################################################################################################################################################################################################cccHHHHHHHHTTccHHHHHHHHTccHHHHHHHTT DISOP:02AL 1-6, 297-327| PSIPRED ccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEccHHHHHHHHHcccccccccccccccccHHHHHHHccccEEEEccHHHHHHccccEEEEEEEEcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEccHHHHHHHccccccccccHHHHHcccHHHHHHHHcccccccHHHHcccHHHHHccccccccccccccccccccccccHHHHHccHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHcc //