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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sucA
DDBJ      :sucA         2-oxoglutarate dehydrogenase E1 component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  604/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.36.1c.48.1
:967 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   103->962 2jgdA PDBj 0.0 48.5 %
:RPS:PDB   263->967 1ay0A PDBj 9e-68 12.2 %
:RPS:SCOP  189->570 1ni4A  c.36.1.11 * 5e-45 20.7 %
:RPS:SCOP  610->814 1dtwB1  c.36.1.7 * 1e-49 22.8 %
:RPS:SCOP  840->967 1dtwB2  c.48.1.2 * 8e-12 14.3 %
:HMM:SCOP  171->543 1w85A_ c.36.1.11 * 2.1e-92 30.8 %
:HMM:SCOP  594->814 2bfdB1 c.36.1.7 * 1.6e-50 36.2 %
:RPS:PFM   232->542 PF00676 * E1_dh 4e-51 43.7 %
:RPS:PFM   613->805 PF02779 * Transket_pyr 6e-23 40.5 %
:RPS:PFM   832->944 PF05342 * Peptidase_M26_N 5e-04 32.0 %
:HMM:PFM   612->806 PF02779 * Transket_pyr 8.6e-69 47.7 176/178  
:HMM:PFM   229->545 PF00676 * E1_dh 9.4e-62 25.3 288/300  
:BLT:SWISS 9->957 ODO1_BRUC2 0.0 54.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21058.1 GT:GENE sucA GT:PRODUCT 2-oxoglutarate dehydrogenase E1 component GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(236922..239825) GB:FROM 236922 GB:TO 239825 GB:DIRECTION - GB:GENE sucA GB:PRODUCT 2-oxoglutarate dehydrogenase E1 component GB:PROTEIN_ID AAZ21058.1 GB:DB_XREF GI:71062055 GB:GENE:GENE sucA LENGTH 967 SQ:AASEQ MSSSKNLEFEKTSFLSKSNSAFIEQMYLKFINKDKDLPESWQNYFEGMSEDLSMIAKEINGPSWNIKKKIDIDEVEKRIEEDEKKLSNEGNIAKVNSKDLVKSNINSIRAVALIRAYRQRGHLLAKLDPLGMMETEYLDELHPEHYGFKKENYDEKIYLDGVINKEHSSIKEILNFLNKTYCGPIGYEYMHISNPTERKWLRDRIEQDENSLQFTKNGKEAILMKLIQAEGFEKFLHKKYVGTKRFGLDGGEGLIPALEQIIKIGGQAKVKEVKIGMSHRGRLNVLANVLQKSYKRIFNEFAGDIQTSGEEGAGDVKYHLGASSNREFDGNSVHVSLTDNPSHLEAVNPVVLGQTRAKQFFHKDKERNKVIPILIHGDAAFAGQGVVTECFAMSGLPGHNTGGTIHIIVNNQIGFTTSPRFARSSPYPSDVAKMVDAPILHVNGDDPEAVVYATRIATEFRLKFNRDVVVDLICYRRFGHNEGDEPSFTQPLMYKKIRSHPTPVEMYGKKLVNENTLSESELSKFKTDFKNLLDDQYKNAKDYKPKIEWYEGTWSRYKPEKGKDKRGVSGYDQQKLLEISEKINATPEKLKLHKTIVKILDARKASVSNGKGIDWSTAEALAFGSLLEEGYPVRLVGQDSGRGTFSQRHSVLRNQEDNSRYIPLNNISKNQMRYEIVDSFLSELAVLGFEYGYSLVEPNTLTIWEAQFGDFANGAQVVIDQFIASGERKWTRASGLVMLLPHGYEGQGPEHSSARLERFLQLCANDNLQVLNCTTPANYYHALRRQMHREFRKPLIIMTPKSLLRNKHCVSNIEDFGKDNFFHRILWDHALDEENGFIKLKESSKIKKVILCSGKVYFDLLEAREKLKKDDVVLYRIEQLYPFPVKSLVREIKKYAKNANFYWCQEEPKNMGAWFSVRDYIQWTLETINANNTGISYIGRSPDASPATGYAKRHLAQQQEIIKKVFE GT:EXON 1|1-967:0| BL:SWS:NREP 1 BL:SWS:REP 9->957|ODO1_BRUC2|0.0|54.7|947/1004| SEG 66->85|ikkkididevekrieedekk| BL:PDB:NREP 1 BL:PDB:REP 103->962|2jgdA|0.0|48.5|804/812| RP:PDB:NREP 1 RP:PDB:REP 263->967|1ay0A|9e-68|12.2|633/678| RP:PFM:NREP 3 RP:PFM:REP 232->542|PF00676|4e-51|43.7|286/298|E1_dh| RP:PFM:REP 613->805|PF02779|6e-23|40.5|168/172|Transket_pyr| RP:PFM:REP 832->944|PF05342|5e-04|32.0|97/250|Peptidase_M26_N| HM:PFM:NREP 2 HM:PFM:REP 612->806|PF02779|8.6e-69|47.7|176/178|Transket_pyr| HM:PFM:REP 229->545|PF00676|9.4e-62|25.3|288/300|E1_dh| GO:PFM:NREP 5 GO:PFM GO:0008152|"GO:metabolic process"|PF00676|IPR001017| GO:PFM GO:0016624|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"|PF00676|IPR001017| GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF05342|IPR008006| GO:PFM GO:0008270|"GO:zinc ion binding"|PF05342|IPR008006| GO:PFM GO:0016021|"GO:integral to membrane"|PF05342|IPR008006| RP:SCP:NREP 3 RP:SCP:REP 189->570|1ni4A|5e-45|20.7|348/362|c.36.1.11| RP:SCP:REP 610->814|1dtwB1|1e-49|22.8|184/188|c.36.1.7| RP:SCP:REP 840->967|1dtwB2|8e-12|14.3|119/138|c.48.1.2| HM:SCP:REP 171->543|1w85A_|2.1e-92|30.8|328/0|c.36.1.11|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 594->814|2bfdB1|1.6e-50|36.2|196/0|c.36.1.7|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 1192 OP:NHOMOORG 795 OP:PATTERN -------------------------------------------------------------------- 111111111111111-111-11111111111111111111111111111111111111--11111111111-----------1--------------1111111121111111111111111111---1----11-11111----1-------------------------------------11111---1-11111111111111111111111111111111-------111111111111111111111------------------------------------------------------------------------------------------------------------------------1-1111111111111111111111122222222222-11111111111211111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111211111122111111111121111112111111111111111---1111111111111111--------------11111111-111111-1---------------------------111111111111111111111111111111--1111111111121111111112122211-1111121111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111--1-111111----------------------------------------------111 11--222-522-222-111111132421111111111111111111211111221111111111111111111111111111113111-24212261112211324-3-26654446333333397333EY423593333633331332343363343337I23328F63F22532112U2221232631248144331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 865 STR:RPRED 89.5 SQ:SECSTR ######################################################################################################HHHHHHHHHHHHHHHHHHGGGGcccccccccccGGGccccccccccccccccTTccGGGcccccTTccccccTTccGGGGTTGGGcccccccTTcccccGGGcccGGGcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHTTccHHHHHHHHHHHHHHHTccccTTcTTcTTccEEEEccGGHHHHHHHHHHTTHHTTTTcTTccccccccTTcTTcccccccTTHHHHHHHHHHHHHHHccTTcccccccEEEEEcHHHHHcHHHHHHccHHHHHHHTTcTTEEEEEEEccEETTEEEGGGTccccHHHHHHHHTcEEEEEccTTTcHHHHHHHHHHHTTHcTTccEEEEEEccTTTTcTTTTcGGGTcccccccHHHHHHHHHHTTccTTccccccHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHTTTcccTTGGGGcccccTTcccEEHHHHHHHHHHHHTTTcTTEEEEEcccHHHHTcccTTccEEccGGGccEETTccETTHHHHHcTTTccTTccccTTcTTccEEEccccHHHHHHHHHHHHHHcTEEEETcEEEEEEEHHHHGGGHHHHHHHHHHTcEccEEEEEcccGGGcTTcTTcccccHHHHHHHTcccccEEEccccHHHHHHHHHHHHHHcccccEEEEccccEEcccTTccHHHHTGGGGGccEEEEcccccTccEEEEccccccEcEEEEEcTTHHHHHHHHHHHHHHTcEEEEEcccHHHHHTccHHHHHHHcccTTccEEEEcccccGGGGGTccEEEcccccccccHHHHHHHHTccHcHHHHHHHHHHHHHHTTcccccTTc DISOP:02AL 1-6, 53-66, 86-98, 307-314| PSIPRED ccccHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHcccHHHccEEEEcccccccccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccEEHHHHHHcccHHHHHHHHccccccccccccccccccEEEcccccccccEEEEEEEccccccccccHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHccccccccEEEEEEEccEEEEEcHHHHcccccHHHHHHEEcccEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEcccccccEEEEEEEEEEEEccccEEEEccccccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEHHHHHHHHHHHHHcccEEEcccccccccccccHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccEEEEEcHHHHHcccccccHHHcccccccEEcccccccccccccccccccccccEEEEEccHHHHHHHHHHHHcccccEEEEEEHHHcccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcc //