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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sucB
DDBJ      :sucB         2-oxoglutarate dehydrogenase complex E2 component
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  781/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
a.9.1b.84.1c.43.1
:425 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->78 1pmrA PDBj 4e-17 51.9 %
:BLT:PDB   143->180 1zwvA PDBj 5e-07 47.4 %
:BLT:PDB   196->425 1sczA PDBj 7e-84 61.3 %
:RPS:PDB   4->81 2dneA PDBj 1e-15 29.5 %
:RPS:PDB   145->178 3dufI PDBj 1e-08 47.1 %
:RPS:PDB   198->422 1c4tA PDBj 1e-84 60.4 %
:RPS:SCOP  1->82 1y8nB1  b.84.1.1 * 3e-16 29.3 %
:RPS:SCOP  144->176 1balA  a.9.1.1 * 4e-08 36.4 %
:RPS:SCOP  196->422 1c4tA  c.43.1.1 * 1e-90 61.6 %
:HMM:SCOP  1->98 1y8oB1 b.84.1.1 * 5.5e-25 42.9 %
:HMM:SCOP  133->183 1balA_ a.9.1.1 * 1.8e-10 35.3 %
:HMM:SCOP  182->423 1eafA_ c.43.1.1 * 2.8e-88 49.0 %
:RPS:PFM   8->76 PF00364 * Biotin_lipoyl 1e-12 50.7 %
:RPS:PFM   145->177 PF02817 * E3_binding 7e-04 51.5 %
:RPS:PFM   194->423 PF00198 * 2-oxoacid_dh 8e-70 54.6 %
:HMM:PFM   194->423 PF00198 * 2-oxoacid_dh 9.2e-84 45.0 229/231  
:HMM:PFM   4->76 PF00364 * Biotin_lipoyl 4.5e-24 45.2 73/74  
:HMM:PFM   143->176 PF02817 * E3_binding 8.8e-15 47.1 34/39  
:BLT:SWISS 2->425 ODO2_ECOLI e-103 50.3 %
:PROS 27->56|PS00189|LIPOYL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21057.1 GT:GENE sucB GT:PRODUCT 2-oxoglutarate dehydrogenase complex E2 component GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(235642..236919) GB:FROM 235642 GB:TO 236919 GB:DIRECTION - GB:GENE sucB GB:PRODUCT 2-oxoglutarate dehydrogenase complex E2 component GB:PROTEIN_ID AAZ21057.1 GB:DB_XREF GI:71062054 GB:GENE:GENE sucB LENGTH 425 SQ:AASEQ MSEKILVPVLGESITEATVAKWLKKEGDTVVADEAIVELETDKVNLEVPSPIDGVLSEINSKDGETVEVGALLGMISQNGAQPSEKKIITKIEPKKTENNVVNLEIKKEAPKVLKEPEEEEPLVLTNEVKEEKTNSSNNNNEILSPAVRKIVVENKIDLKKVSGSGKEGRVLKGDLISMMGENPQPSERKIKYGQEERIKMSRLRQTIAKRLKQAQENAALLTTFNEVDMTGIMEMRKENQEDFQSRYGIKLGFMSFFVKACVAALKMYPSVNAEIDGDEIIYKNYYNMSFAVGTEKGLVVPVLRDADQLSFADIEKNIKTISEKARDGKITIEDLQGGTFTISNGGVYGSMLSTPILNLPQSGVLGMHNIVERPMVVDGEIKIRPIMYLALSYDHRIIDGKESVSFLKMVKENLEDPRRLFLNI GT:EXON 1|1-425:0| BL:SWS:NREP 1 BL:SWS:REP 2->425|ODO2_ECOLI|e-103|50.3|392/405| PROS 27->56|PS00189|LIPOYL|PDOC00168| SEG 85->98|ekkiitkiepkkte| SEG 108->142|keapkvlkepeeeeplvltnevkeektnssnnnne| BL:PDB:NREP 3 BL:PDB:REP 2->78|1pmrA|4e-17|51.9|77/80| BL:PDB:REP 143->180|1zwvA|5e-07|47.4|38/52| BL:PDB:REP 196->425|1sczA|7e-84|61.3|230/233| RP:PDB:NREP 3 RP:PDB:REP 4->81|2dneA|1e-15|29.5|78/108| RP:PDB:REP 145->178|3dufI|1e-08|47.1|34/38| RP:PDB:REP 198->422|1c4tA|1e-84|60.4|225/226| RP:PFM:NREP 3 RP:PFM:REP 8->76|PF00364|1e-12|50.7|69/74|Biotin_lipoyl| RP:PFM:REP 145->177|PF02817|7e-04|51.5|33/39|E3_binding| RP:PFM:REP 194->423|PF00198|8e-70|54.6|229/232|2-oxoacid_dh| HM:PFM:NREP 3 HM:PFM:REP 194->423|PF00198|9.2e-84|45.0|229/231|2-oxoacid_dh| HM:PFM:REP 4->76|PF00364|4.5e-24|45.2|73/74|Biotin_lipoyl| HM:PFM:REP 143->176|PF02817|8.8e-15|47.1|34/39|E3_binding| GO:PFM:NREP 5 GO:PFM GO:0005515|"GO:protein binding"|PF02817|IPR004167| GO:PFM GO:0008152|"GO:metabolic process"|PF02817|IPR004167| GO:PFM GO:0008415|"GO:acyltransferase activity"|PF02817|IPR004167| GO:PFM GO:0008152|"GO:metabolic process"|PF00198|IPR001078| GO:PFM GO:0008415|"GO:acyltransferase activity"|PF00198|IPR001078| RP:SCP:NREP 3 RP:SCP:REP 1->82|1y8nB1|3e-16|29.3|82/97|b.84.1.1| RP:SCP:REP 144->176|1balA|4e-08|36.4|33/51|a.9.1.1| RP:SCP:REP 196->422|1c4tA|1e-90|61.6|224/226|c.43.1.1| HM:SCP:REP 1->98|1y8oB1|5.5e-25|42.9|98/0|b.84.1.1|1/1|Single hybrid motif| HM:SCP:REP 133->183|1balA_|1.8e-10|35.3|51/51|a.9.1.1|1/1|Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex| HM:SCP:REP 182->423|1eafA_|2.8e-88|49.0|241/243|c.43.1.1|1/1|CoA-dependent acyltransferases| OP:NHOMO 2850 OP:NHOMOORG 995 OP:PATTERN 11------1111112---111---2111--11----------------------------1111---- 1222522222223242333-322233333333444435763444344433335564452244434364644-----------4---1-111--1--22233334333333333333333333332---1----12-34433---221111111111111111111111121111111111111333332--424444444443444444474454444455344322222242233333333333333344432-1-22-1---111111111111111111222222211111-111112222222222222311222111111---1111111-1--211---------3--------------11311-13-2533233333324223222222244444433445-336236342532344343654455334334352222243444444443332233322222222221222222222222222222245A31232233443443333322243333243333334233332222222444222211112322222222233322-1-2----------323133421333333-21---------------------111113223323343434333343333333333441-2432222222232222222222233322-222223322223222222323322232222222222222222222222222222222222222222223333333333223232222222222222223333323222324444343333333222222222222211223222223323333333332222222111-222221----------111111-1-21111111221111-------------222 32--444-733-3333343343344433333333333423333333344555554433333342222222222222222222222223-35232222222233656-3548466656444324456484Ae4-74C3443523644444344362954449F38343434B54544534y444558AFE4B555A6574 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 367 STR:RPRED 86.4 SQ:SECSTR EEEEEEcccccccccEEEEEEccccTTcEEcTTcEEEEEEccccEEEEEccccEEEEEccccTTccEETTcEEEEEEccHHTGG##########################################################ccccHHHHHHHHTTccTTTcccccccccccHHHHHcHHHHHccccccGGGccccccccccccccHHHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHcEEETTEEEccccccEEEcEEETTEEEccEEccTTTccHHHHHHHHHHHHHHHHTTcccTTTTccccEEEEEcGGGTcccccccccTTccEEEEEcccEEEEEEETTEEEEEEEEEEEEEEETTTccHHHHHHHHHHHHHHHTcGGGTcccc DISOP:02AL 84-150, 159-203| PSIPRED ccEEEEcccccccccEEEEEEEEEccccEEccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHccccccccccccHHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEEccccEEEcccccEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccHHHHccccEEEEEccccccEEEEEEEccccEEEEEEcccEEEEEEEccEEEEEEEEEEEEEEcccEEEHHHHHHHHHHHHHHHHcHHHHHHcc //