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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sucC
DDBJ      :sucC         Succinyl-CoA synthetase beta chain (SCS-beta)
Swiss-Prot:SUCC_PELUB   RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta;         EC=6.2.1.5;AltName: Full=Succinyl-CoA synthetase subunit beta;         Short=SCS-beta;

Homologs  Archaea  55/68 : Bacteria  669/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
c.23.4d.142.1
:386 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->385 2fp4B PDBj 3e-87 43.6 %
:RPS:PDB   1->385 1cqjB PDBj 7e-62 46.2 %
:RPS:SCOP  1->237 1eucB2  d.142.1.4 * 1e-74 36.7 %
:RPS:SCOP  239->385 1cqiB1  c.23.4.1 * 8e-39 59.9 %
:HMM:SCOP  1->238 1eucB2 d.142.1.4 * 3.7e-74 42.6 %
:HMM:SCOP  239->386 1eucB1 c.23.4.1 * 2.2e-53 52.0 %
:RPS:PFM   3->203 PF08442 * ATP-grasp_2 7e-35 42.4 %
:RPS:PFM   264->381 PF00549 * Ligase_CoA 6e-24 53.9 %
:HMM:PFM   2->202 PF08442 * ATP-grasp_2 6.6e-75 49.3 201/202  
:HMM:PFM   262->381 PF00549 * Ligase_CoA 5.7e-28 34.2 120/153  
:BLT:SWISS 1->386 SUCC_PELUB 0.0 100.0 %
:PROS 257->281|PS01217|SUCCINYL_COA_LIG_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21060.1 GT:GENE sucC GT:PRODUCT Succinyl-CoA synthetase beta chain (SCS-beta) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(240737..241897) GB:FROM 240737 GB:TO 241897 GB:DIRECTION - GB:GENE sucC GB:PRODUCT Succinyl-CoA synthetase beta chain (SCS-beta) GB:PROTEIN_ID AAZ21060.1 GB:DB_XREF GI:71062057 GB:GENE:GENE sucC LENGTH 386 SQ:AASEQ MNIHEHQAKQILKKYGAVVPEGVFAFTVDELIEKAKSLKTEKFVLKAQIHAGGRGKAGGVKILNTIDELSVAAKELLGKTLVTHQTGPAGREVKRLYVEESSNIDKEFYLSCLVDRASSKIVFISSDQGGMDIEEVAEKTPEKIITTKIDITDEISDADCEKIIAIYALADDAKKQAIALIKSVYKMFLGTDANMVEVNPLILTKEKKIICLDAKVNFDSNALFRHPEIIELRDLNEEDPTEIDASKHDLAYIKLDGSIGCMVNGAGLAMATMDIIKLYGEEPANFLDVGGGASKEKVSAALKIILSDKNVKGILINIFGGIMRCDVLAQGVVDAAKEINISVPLVVRLAGTNFKEGKEILDNSGLKLISAENLDDAAQKIVEAIK GT:EXON 1|1-386:0| SW:ID SUCC_PELUB SW:DE RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta; EC=6.2.1.5;AltName: Full=Succinyl-CoA synthetase subunit beta; Short=SCS-beta; SW:GN Name=sucC; OrderedLocusNames=SAR11_0239; SW:KW ATP-binding; Complete proteome; Ligase; Magnesium; Manganese;Metal-binding; Nucleotide-binding; Tricarboxylic acid cycle. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->386|SUCC_PELUB|0.0|100.0|386/386| GO:SWS:NREP 5 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006099|"GO:tricarboxylic acid cycle"|Tricarboxylic acid cycle| PROS 257->281|PS01217|SUCCINYL_COA_LIG_3|PDOC00335| SEG 138->157|ektpekiittkiditdeisd| BL:PDB:NREP 1 BL:PDB:REP 1->385|2fp4B|3e-87|43.6|385/393| RP:PDB:NREP 1 RP:PDB:REP 1->385|1cqjB|7e-62|46.2|385/385| RP:PFM:NREP 2 RP:PFM:REP 3->203|PF08442|7e-35|42.4|198/199|ATP-grasp_2| RP:PFM:REP 264->381|PF00549|6e-24|53.9|115/127|Ligase_CoA| HM:PFM:NREP 2 HM:PFM:REP 2->202|PF08442|6.6e-75|49.3|201/202|ATP-grasp_2| HM:PFM:REP 262->381|PF00549|5.7e-28|34.2|120/153|Ligase_CoA| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF00549|IPR005811| GO:PFM GO:0008152|"GO:metabolic process"|PF00549|IPR005811| RP:SCP:NREP 2 RP:SCP:REP 1->237|1eucB2|1e-74|36.7|237/246|d.142.1.4| RP:SCP:REP 239->385|1cqiB1|8e-39|59.9|147/147|c.23.4.1| HM:SCP:REP 1->238|1eucB2|3.7e-74|42.6|235/0|d.142.1.4|1/1|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 239->386|1eucB1|2.2e-53|52.0|148/0|c.23.4.1|1/1|Succinyl-CoA synthetase domains| OP:NHOMO 1258 OP:NHOMOORG 913 OP:PATTERN 111111111111111111111112111111111111111111111111-----1-------1111-11 111111-1111---11111-11111111111111111111111111111111111111--111111122111111111----122111111------11111111111111111111111111112222222222111111---11-11---------------1--1111------------11111---1111111111111121111111111111111111------1111111111111111111111-----------------------------------------------------------------------11-------------------------1--1-33--1--111-------1-1111111111111111131111211111111111-332222221211111111211111121112111111312--------111-2111111111111111111111111111111111111111111111111111111111311111111111121111122111111121111111111111111122211111111111-11111-32313141111211121--11111111----------11111111111111111111111111111111111111111111------21111111112122211-11111221111211111121111111111111111111111111111111111111111111111111111111111121111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111-111111------------------------------------1---1-1---111 11--222-311-11122222333323222222222222222222221222231311222222111111-11111111-1111-11111-11121111111112112-21363421332222333771B1Ea5-7263222432442322233231534236433232637822341111C1111111222112111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 386 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHTTcccccEEEEccHHHHHHHHHHHccccEEEEEccccccTcccccEEEEccHHHHHHHHHHHTTcEEccTTcccccEEcccEEEEEcccEEEEEEEEEEEETTTTEEEEEEEccTTccHHHHHHHcGGGEEEEEccTTTcccHHHHHHHHHHTTccTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTccEEEcccEEEEcGGGGGGcHHHHHTccGGGccHHHHHHHHTTEEEEEccccEEEEEccHHHHHHHHHHHHHTTccccEEEEEcccccHHHHHHHHHHHTTcTTccEEEEEEEcccccHHHHHHHHHHHHHHHTccccEEEEEEcTTHHHHHHHHHHTcccEEEcccHHHHHHHHHHHcH DISOP:02AL 386-387| PSIPRED ccccHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHccccEEEEEcccccccccccEEEEcccHHHHHHHHHHHHccHHHcccccccccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEccccccHHHHHHHcHHHcccccccHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEcccccEEEEEEEEEEccccccccccHHHccccccccHHHHHHHHcccEEEcccccEEEEEccHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHHc //