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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sufB
DDBJ      :sufB         FeS assembly protein SufB
Swiss-Prot:             

Homologs  Archaea  63/68 : Bacteria  616/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
b.80.6
:480 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   307->459 2zu0B PDBj 1e-14 28.1 %
:RPS:PDB   39->319 2dyoA PDBj 4e-60 7.7 %
:RPS:SCOP  42->477 1vh4A  b.80.6.1 * 4e-84 18.0 %
:HMM:SCOP  33->478 1vh4A_ b.80.6.1 * 1.9e-139 45.2 %
:RPS:PFM   43->104 PF05139 * Erythro_esteras 5e-04 36.7 %
:RPS:PFM   215->451 PF01458 * UPF0051 3e-63 53.5 %
:HMM:PFM   215->451 PF01458 * UPF0051 1.5e-62 28.9 228/230  
:BLT:SWISS 14->480 YCF24_CYAPA 0.0 66.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21558.1 GT:GENE sufB GT:PRODUCT FeS assembly protein SufB GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 722987..724429 GB:FROM 722987 GB:TO 724429 GB:DIRECTION + GB:GENE sufB GB:PRODUCT FeS assembly protein SufB GB:PROTEIN_ID AAZ21558.1 GB:DB_XREF GI:71062555 GB:GENE:GENE sufB LENGTH 480 SQ:AASEQ MDAREKEIEKLKDYKYGFSTDIENTRAPKGLNEEVIKFISNIKKEPQWMLDWRLKAFERLKQLKEPNWQKPKYPKIDYQDLYYYSAPKSMDDKPKSLDELDPKLLETYNKLGIPLQEQARLNGIAVDAVFDSVSVATTFKGELNKKGIIFCSMSEAIQDHPELVKKYLGSVIPISDHYFATLNSAVFTDGSFVYIPEGVRCPMELSTYFRINATETGQFERTLIIADKGSYVSYLEGCTAPMRDENQLHAANVELVALDDAEIKYSTVQNWYPGDKDGKGGIYNFVTKRGLCKGKNSKISWTQVETGSAITWKYPSCILMGDNSVGEFYSIAITNNHQKADTGTKMIHLGKNTKSKIISKGISAGFADNTYRGLVDISKNADNARNFTQCDSLLMGNKCGAHTVPYIKNKNSSSNIEHEATTSKISDEQLFYCNQRGLNQEEAVSLIVNGFCKEVLQQLPMEFAVEAQKLVGISLEGSVG GT:EXON 1|1-480:0| BL:SWS:NREP 1 BL:SWS:REP 14->480|YCF24_CYAPA|0.0|66.1|466/486| SEG 125->136|avdavfdsvsva| BL:PDB:NREP 1 BL:PDB:REP 307->459|2zu0B|1e-14|28.1|153/414| RP:PDB:NREP 1 RP:PDB:REP 39->319|2dyoA|4e-60|7.7|261/269| RP:PFM:NREP 2 RP:PFM:REP 43->104|PF05139|5e-04|36.7|60/339|Erythro_esteras| RP:PFM:REP 215->451|PF01458|3e-63|53.5|228/230|UPF0051| HM:PFM:NREP 1 HM:PFM:REP 215->451|PF01458|1.5e-62|28.9|228/230|UPF0051| GO:PFM:NREP 3 GO:PFM GO:0046677|"GO:response to antibiotic"|PF05139|IPR007815| GO:PFM GO:0005515|"GO:protein binding"|PF01458|IPR000825| GO:PFM GO:0016226|"GO:iron-sulfur cluster assembly"|PF01458|IPR000825| RP:SCP:NREP 1 RP:SCP:REP 42->477|1vh4A|4e-84|18.0|395/410|b.80.6.1| HM:SCP:REP 33->478|1vh4A_|1.9e-139|45.2|405/413|b.80.6.1|1/1|Stabilizer of iron transporter SufD| OP:NHOMO 1111 OP:NHOMOORG 702 OP:PATTERN 11212211111111111212121122232223111--1111111-11111112-11111212221-22 --21111222211111111-111111111111111111112221122112222221122211212212221122211111112-----2222212221122222222222111111111111112----------1222221112222222221222122212122122221121111211212222211-2222222222222222222222222222222222222222222222222222222222222221-21122-22222211221222222222222233322222222222222222222222232222222221--22----1---1---221----1-11211-1----------2211--121211112221211233222121112222222222211121121122111111111111113311111111111111111111111111-21-----------------------------111111-------------111----111111-----2---------11--22-------2----------222---112---21111111-------1--21222-111----------------------11-----122-1--2-------------------111222-------22-1-122222222222-22222222222222222221212122222212222222222121212222222122222222222111-22212111111221--------------------------1-----------------1111111111-----------1--22222222221111----112211--------111-----------1------1------122111-111222 -1-----1----------------------------------------------------------------------------------------------------1-----------------------------------------------------------------12111F111113111-22111---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 414 STR:RPRED 86.2 SQ:SECSTR ######################################HHHHHHTcEEEEEEEEcGGGcTTccGGGGEEEEEEEccccGcccGGGHHHHHHcHHGGGcccccccEEEEEETTEEEcTTccHHHHHHHHHGGGcGcTccccccEEEEEEEEEEEEEEEccccTTcccccccTTHHHHHHHHHHHHHHHHHHcccHHHHTccHHHHHHHHHHHHHTcHHHHHHHHHHHcccccccccEEEEccccccccEEccccccTTc##cccTGGGHHHHccTTTc#####cEEEEETTEEEcTTccHHHHHHHHccTTccEEEEEEEcccccEEEEEEEEcccTTcEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEcTTcTTcEEEEEEEEEEccTTcEEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHHTTTccHHHHHHHHHHHHHHHHHTTc##################### DISOP:02AL 1-4| PSIPRED ccccHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHccccHHHHHHHHHEEEEEEEccEEEEccccHHHHHccEEEEcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccEEEEEccccEEcccEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEccccccccccccEEEEEEEEEEEEccccEEEEEEEEEccEEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccEEEEcEEEEccccEEEEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHEEEccccc //