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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : sufD
DDBJ      :sufD         FeS assembly protein sufD
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  565/915 : Eukaryota  25/199 : Viruses  0/175   --->[See Alignment]
b.80.6
:414 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->411 2zu0B PDBj 5e-36 26.1 %
:RPS:SCOP  24->414 1vh4A  b.80.6.1 * 8e-29 24.7 %
:HMM:SCOP  6->412 1vh4A_ b.80.6.1 * 8.2e-88 28.0 %
:RPS:PFM   257->389 PF01458 * UPF0051 1e-25 39.1 %
:HMM:PFM   164->389 PF01458 * UPF0051 2.2e-71 39.4 226/230  
:HMM:PFM   125->162 PF06940 * DUF1287 0.001 28.9 38/164  
:BLT:SWISS 27->411 SUFD_ECOLI 2e-35 26.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21560.1 GT:GENE sufD GT:PRODUCT FeS assembly protein sufD GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 725164..726408 GB:FROM 725164 GB:TO 726408 GB:DIRECTION + GB:GENE sufD GB:PRODUCT FeS assembly protein sufD GB:PROTEIN_ID AAZ21560.1 GB:DB_XREF GI:71062557 GB:GENE:GENE sufD LENGTH 414 SQ:AASEQ MIEQLKSDFNKMTENLKFSENNIEFRKKNLINFIDKGFPNKRIEDWKFSDLNQIISSNIKNLSFYNDKTYEPKDQVSLINKFEHNKIIFINGVISKVDIKYEDDTKVLINNDLDLSNNSNGINPLVSLNHALVSAHIGIIVKENYSLNKPLVLYNITTEDVNSTALNLRTDIKLEKNSNLKLVTIFDDQSQNNFININQNFDIAQDAILKSYKIDHKTNSNIKYFYNNINLEKNSISENFIFSTGSKFIKNEVNCNLNDQYSSAFINGVISLKNSQHHEIKTNINHLAENTKSYQLIKTVLNDNSKGIYQGKIFVDQKAQKTNGYQLSKALLLNENTEFDGKPELEIYADDVKCSHGSTSGNLDEDSIFYLMSRGLSYQQSKELLINGFLMDAVETITDLEIKNLIKEMMGVVE GT:EXON 1|1-414:0| BL:SWS:NREP 1 BL:SWS:REP 27->411|SUFD_ECOLI|2e-35|26.1|379/423| SEG 110->120|nndldlsnnsn| SEG 187->203|ddqsqnnfininqnfdi| BL:PDB:NREP 1 BL:PDB:REP 27->411|2zu0B|5e-36|26.1|379/414| RP:PFM:NREP 1 RP:PFM:REP 257->389|PF01458|1e-25|39.1|133/230|UPF0051| HM:PFM:NREP 2 HM:PFM:REP 164->389|PF01458|2.2e-71|39.4|226/230|UPF0051| HM:PFM:REP 125->162|PF06940|0.001|28.9|38/164|DUF1287| GO:PFM:NREP 2 GO:PFM GO:0005515|"GO:protein binding"|PF01458|IPR000825| GO:PFM GO:0016226|"GO:iron-sulfur cluster assembly"|PF01458|IPR000825| RP:SCP:NREP 1 RP:SCP:REP 24->414|1vh4A|8e-29|24.7|384/410|b.80.6.1| HM:SCP:REP 6->412|1vh4A_|8.2e-88|28.0|403/413|b.80.6.1|1/1|Stabilizer of iron transporter SufD| OP:NHOMO 1091 OP:NHOMOORG 627 OP:PATTERN 11--1-21-------2----111112221122-----111111-----------11111212221-22 --22221111111222222-222222222222222222222222221222222222222222222222222222222221112-----2222222222121222222222111111111122222-----------22222---22222222222222222212222222222222222222222211---222222222222222222222222222222212211111122211111111111111222221--11111-11----11-1-1111112222-112331111111111111111111111112112221111---22------------22-------111--------------222---22-2222222222222442222222222222222222-2222222222222222222222223422222212222222222222222222-22-----------------------------122222-------------------------1-----2-------------12-------1----------222---2-----------------------11221---2----------------------21-----111-1--2-------------------2-1222-------21-2-212222222222-22222222222222222222222222222212222222121121212222211222222222222122-22222111121121--------------------------1-----------------2222222222-----------1--22222222222222----222222--------112-------------------------112221-111122 11-----11---------------------------------------------------------------------------------------------------2------------------------------------------------------------------22118222121113-22112---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 379 STR:RPRED 91.5 SQ:SECSTR ##########################HHHHHHHHHHccccTTcTTccccccHHHHTccEEccc####ccccHHHHHHHccccccEEEEEETTcGGGccccTTcccEEEEEcccTTccccccccHHHHHHHHHcccEEEEEEcTTccccccEEEEEEEcccEEEE##EEEEEEEEcTTcEEEEEEEEEEcccccEEEEEEEEEEcTTcEEEEEEEEEccTTcEEEEEEEEEEcTTcEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEcccTTcEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEcTTcTTcEEEEEEEEEEccTTcEEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHHTTTccHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHH### DISOP:02AL 414-415| PSIPRED cHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccccHHHcccccccccccccEEEEccEEcHHHHHccccccEEEEcccccccccccccHHHHHHHHHHcccEEEEEccccEEcccEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEEccccEEEEEEEEEccccEEEEEccEEEEEccccEEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccc //