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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : surf1
DDBJ      :surf1        surfeit locus protein 1
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  74/915 : Eukaryota  112/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:217 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  64->135 2id0A4  b.40.4.16 * 9e-05 17.9 %
:RPS:PFM   20->199 PF02104 * SURF1 2e-22 35.6 %
:HMM:PFM   12->203 PF02104 * SURF1 5.3e-44 31.9 191/210  
:BLT:SWISS 21->199 SURF1_CHICK 6e-17 33.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20953.1 GT:GENE surf1 GT:PRODUCT surfeit locus protein 1 GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(137954..138607) GB:FROM 137954 GB:TO 138607 GB:DIRECTION - GB:GENE surf1 GB:PRODUCT surfeit locus protein 1 GB:NOTE biogenesis of cytochrome oxidase c GB:PROTEIN_ID AAZ20953.1 GB:DB_XREF GI:71061950 GB:GENE:GENE surf1 LENGTH 217 SQ:AASEQ MRYKFLFSIFVFFFISVFLALGSWQIIRLNWKLELINQIETSLKDIPVNLSNSKHKNYLRVKTRGSIDFEKQIYLYNLNEKGKPGFEVINPLKVGNNNYLLNRGWIPFNKKEDETINVIDENYINGVLRKQIKPNIFKPENDLSENYWFTLDRDDIFKFTGKNFSPYVIYLSGNNEFPKPKSITANISNNHKKYALTWFSLAISILLIYLYLRKKNY GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 21->199|SURF1_CHICK|6e-17|33.9|177/309| TM:NTM 2 TM:REGION 4->26| TM:REGION 196->212| SEG 5->19|flfsifvfffisvfl| SEG 200->212|slaisilliylyl| RP:PFM:NREP 1 RP:PFM:REP 20->199|PF02104|2e-22|35.6|180/207|SURF1| HM:PFM:NREP 1 HM:PFM:REP 12->203|PF02104|5.3e-44|31.9|191/210|SURF1| RP:SCP:NREP 1 RP:SCP:REP 64->135|2id0A4|9e-05|17.9|67/381|b.40.4.16| OP:NHOMO 217 OP:NHOMOORG 186 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111--1------1--22122222222-11111121121--222122222211-----------111--------------1---111111--11111111111111-----1---1-----1--------------------------------------1-----11---------------11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----2-------11111111111111111111111111111111111111111111-11111--1----------------111-111-1111-11----11-111-1--212111-1----1-12111211-111-1-12112--1-1-1--1-11--11-1111----31111--------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 132-143| PSIPRED ccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEcccEEEEEcEEEcccccEEEEEEEEEcccEEEEEcccccccccccccccccccEEEEEEEEEccccccccccccccccEEEEEcHHHHHHHHccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc //