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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : thrS
DDBJ      :thrS         Threonyl-tRNA synthetase
Swiss-Prot:SYT_PELUB    RecName: Full=Threonyl-tRNA synthetase;         EC=6.1.1.3;AltName: Full=Threonine--tRNA ligase;         Short=ThrRS;

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.116.1c.51.1d.104.1d.15.10d.67.1
:638 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->627 1qf6A PDBj 0.0 48.6 %
:RPS:PDB   48->523 2cjaB PDBj 1e-86 14.2 %
:RPS:SCOP  4->59 1nyqA2  d.15.10.1 * 1e-13 37.5 %
:RPS:SCOP  61->242 1nyqA3  d.67.1.1 * 8e-53 47.5 %
:RPS:SCOP  242->532 1evkA2  d.104.1.1 * e-125 56.2 %
:RPS:SCOP  511->634 1o6dA  c.116.1.3 * 2e-27 10.5 %
:HMM:SCOP  2->61 1qf6A2 d.15.10.1 * 9.1e-15 48.3 %
:HMM:SCOP  63->241 1qf6A3 d.67.1.1 * 6.4e-64 47.8 %
:HMM:SCOP  242->533 1evlA2 d.104.1.1 * 2e-102 35.4 %
:HMM:SCOP  534->635 1evlA1 c.51.1.1 * 1.3e-28 42.2 %
:RPS:PFM   4->61 PF02824 * TGS 2e-07 43.1 %
:RPS:PFM   179->219 PF07973 * tRNA_SAD 3e-05 63.6 %
:RPS:PFM   289->436 PF00587 * tRNA-synt_2b 3e-17 32.7 %
:RPS:PFM   543->627 PF03129 * HGTP_anticodon 4e-13 37.6 %
:HMM:PFM   274->438 PF00587 * tRNA-synt_2b 3.6e-45 29.9 164/173  
:HMM:PFM   542->630 PF03129 * HGTP_anticodon 2.4e-24 37.1 89/94  
:HMM:PFM   169->219 PF07973 * tRNA_SAD 1.1e-18 39.5 43/44  
:HMM:PFM   4->61 PF02824 * TGS 2.3e-12 34.5 58/60  
:BLT:SWISS 1->638 SYT_PELUB 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21260.1 GT:GENE thrS GT:PRODUCT Threonyl-tRNA synthetase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 431806..433722 GB:FROM 431806 GB:TO 433722 GB:DIRECTION + GB:GENE thrS GB:PRODUCT Threonyl-tRNA synthetase GB:PROTEIN_ID AAZ21260.1 GB:DB_XREF GI:71062257 GB:GENE:GENE thrS LENGTH 638 SQ:AASEQ MPLITLPDGNTIEFPNKVTGLEVAEKISKSLSKQATIISVNEELKDLSFVLDKDCSVKIFTSKDKEGLETIRHDTAHITAMAVQELFPGTQVTIGPIIENGFYYDFSRKEPFTEDDLNKIENKMKEIVDRDVPTTREVWKRDKAISHFKDKGEIYKAEIIESIPQGEDVSIYFHGDWHDLCRGPHLSSTGKIGKYFKLTKVSGAYWRGDSNNEMLQRIYGTSWASQKDLDEYLKRIEEAEKRDHRKLGKEMDLFHFREESPGSVFWHEKGWKLFQKLVAYMRARQEKAGYKEVNTPEILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGLKSYRDLPLRISEFGKVHRYEPSGALHGLLRVRAFTQDDAHIFCTEDQITSECLIVTNLILDIYKDLGFEDVILKYSDRPDLRVGDDNVWDKAEKALLDAVKASKLQYTINKGEGAFYGPKIEFVLRDAIGRDWQCGTLQVDLNLPGRLDASFVDKDGTKKIPVMLHRALFGSLERFIGILIENYAGKFPFWIAPLQVVVIPISEEFDSYAKEVNEKINNAGISSEVDLKNHNLNYKIREHSLSKIPLLLICGKKEVDSNSVTIRRLDTNKQENMELNLFLETFSALNKASSN GT:EXON 1|1-638:0| SW:ID SYT_PELUB SW:DE RecName: Full=Threonyl-tRNA synthetase; EC=6.1.1.3;AltName: Full=Threonine--tRNA ligase; Short=ThrRS; SW:GN Name=thrS; OrderedLocusNames=SAR11_0438; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->638|SYT_PELUB|0.0|100.0|638/638| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 2->627|1qf6A|0.0|48.6|624/641| RP:PDB:NREP 1 RP:PDB:REP 48->523|2cjaB|1e-86|14.2|436/476| RP:PFM:NREP 4 RP:PFM:REP 4->61|PF02824|2e-07|43.1|58/60|TGS| RP:PFM:REP 179->219|PF07973|3e-05|63.6|33/44|tRNA_SAD| RP:PFM:REP 289->436|PF00587|3e-17|32.7|147/170|tRNA-synt_2b| RP:PFM:REP 543->627|PF03129|4e-13|37.6|85/91|HGTP_anticodon| HM:PFM:NREP 4 HM:PFM:REP 274->438|PF00587|3.6e-45|29.9|164/173|tRNA-synt_2b| HM:PFM:REP 542->630|PF03129|2.4e-24|37.1|89/94|HGTP_anticodon| HM:PFM:REP 169->219|PF07973|1.1e-18|39.5|43/44|tRNA_SAD| HM:PFM:REP 4->61|PF02824|2.3e-12|34.5|58/60|TGS| GO:PFM:NREP 14 GO:PFM GO:0005524|"GO:ATP binding"|PF07973|IPR012947| GO:PFM GO:0005737|"GO:cytoplasm"|PF07973|IPR012947| GO:PFM GO:0006412|"GO:translation"|PF07973|IPR012947| GO:PFM GO:0016876|"GO:ligase activity, forming aminoacyl-tRNA and related compounds"|PF07973|IPR012947| GO:PFM GO:0043039|"GO:tRNA aminoacylation"|PF07973|IPR012947| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00587|IPR002314| GO:PFM GO:0005524|"GO:ATP binding"|PF00587|IPR002314| GO:PFM GO:0005737|"GO:cytoplasm"|PF00587|IPR002314| GO:PFM GO:0006412|"GO:translation"|PF00587|IPR002314| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF03129|IPR004154| GO:PFM GO:0005524|"GO:ATP binding"|PF03129|IPR004154| GO:PFM GO:0006412|"GO:translation"|PF03129|IPR004154| RP:SCP:NREP 4 RP:SCP:REP 4->59|1nyqA2|1e-13|37.5|56/59|d.15.10.1| RP:SCP:REP 61->242|1nyqA3|8e-53|47.5|179/179|d.67.1.1| RP:SCP:REP 242->532|1evkA2|e-125|56.2|290/291|d.104.1.1| RP:SCP:REP 511->634|1o6dA|2e-27|10.5|124/147|c.116.1.3| HM:SCP:REP 2->61|1qf6A2|9.1e-15|48.3|60/0|d.15.10.1|1/1|TGS-like| HM:SCP:REP 63->241|1qf6A3|6.4e-64|47.8|178/179|d.67.1.1|1/1|ThrRS/AlaRS common domain| HM:SCP:REP 242->533|1evlA2|2e-102|35.4|291/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 534->635|1evlA1|1.3e-28|42.2|102/110|c.51.1.1|1/1|Class II aaRS ABD-related| OP:NHOMO 2038 OP:NHOMOORG 1171 OP:PATTERN 11221111222222211222122111111121121111111111111112111111111111211112 1111311111111111111-12111111111111112211122223222222222222112222112222111112222112121222221211231--1211211111111111111111111211111111111111111211143111121111111111111122111111111111111111111211122222222422222222223222222231111111111212222222222222231122212211211211122112122222222222222222222222222222222222222222211222111232124111111121333223111222121113111221321121223222111111222222212322222122222222222222-22222222221222222222222222112111111111122222222222111212211111111112222222221222121121111112222111112111111121111111221222111111111111111111131112221111111112222211111112111122111111111111121211111122122111111111111112111122221122212222222111121221221-1122211111132222222222222222-22222222222222222222231221222222222222222221222222211222222222222111222222111111323111222111221112222222111122222222121222221221111111111111311111211112222222222222211212211111111111131121212-11111111111111111111231122222121 1111332-311122212222222222222222222122222222222222222222222222222222222122222-2323333322-1312111111111222212B324733643323333573639U3-66B3333933442334333494434213A11121311512322232F2222242442432262223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 634 STR:RPRED 99.4 SQ:SECSTR ccEccccccTTcccccEETTEEEEEEHcHHHHHEccTTcccEEEEccccccEEEEEEEEEEccccGGGHHEEcccccTTHHHHHHHHHHHHHTGccTTcccEEEEEEGGGTTEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEcccccccccccTTEEEEEETTTEEEEEEcccHHHHTTHHHHHHHHHHHHHHHHHTTTcccccEEEEEccccccccccHHHHHTTcEEcTTcEEEcHHHHHHHHHHHHHHHHHTTTTTTcEEccccEEEHHHHHHHTGGGTcGGGccEEccccccccEEcccccGGGGTTTTccEEcTTTccEEEEEccEEEccccccccccTTcccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHTcccccEEEEEEcccccEEEEEEEccGGGcTTcccTTcccEEEEEEEEcTTHHHHHTTcEETTccccEEEEEEEEHHHHHHHHHHcHHcccGGETTGccHHHHHHHcccccccHHHHHHHcccGGGccHHHHHHHccccccccHHHHHHHHHHHTTccccEEEcccccHHHHHHHHHHTTccEEEEEcHHHHTcTEEEEEETTTccEEEEEHHHHHHHHHHHHH#### DISOP:02AL 635-638| PSIPRED ccEEEEcccEEEEEcccccHHHHHHHccccccccEEEEEEccEEEEccEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEcccEEcHHHHHHcccccccccccEEEEEccccEEEEcccccHHHHHHHHHccccHHHccEEEEEEEEEEEEcccccccccEEEEEEEEEcEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEccccccccccEEEEEEEEccccccEEccEEEEccccHHHHccEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccEEEEEccccHHccEEEEEEccccEEEEEcHHHHHHHHHHHHHHHcc //