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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tktB
DDBJ      :tktB         Transketolase
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  868/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.36.1c.48.1
:652 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->650 1qgdA PDBj e-159 46.5 %
:RPS:PDB   4->650 2e6kA PDBj e-110 39.5 %
:RPS:SCOP  4->314 1ay0A1  c.36.1.10 * 6e-94 46.6 %
:RPS:SCOP  338->511 1dtwB1  c.36.1.7 * 5e-43 10.5 %
:RPS:SCOP  527->651 1ay0A3  c.48.1.1 * 2e-23 36.7 %
:HMM:SCOP  2->320 1l8aA1 c.36.1.10 * 2e-105 45.4 %
:HMM:SCOP  320->515 1qgdA1 c.36.1.6 * 5.4e-66 45.3 %
:HMM:SCOP  519->651 1r9jA3 c.48.1.1 * 1.2e-34 37.5 %
:RPS:PFM   8->267 PF00456 * Transketolase_N 3e-83 58.5 %
:RPS:PFM   342->509 PF02779 * Transket_pyr 7e-17 36.8 %
:RPS:PFM   539->638 PF02780 * Transketolase_C 5e-07 35.4 %
:HMM:PFM   5->313 PF00456 * Transketolase_N 3e-129 51.6 308/333  
:HMM:PFM   341->512 PF02779 * Transket_pyr 6.6e-47 35.1 168/178  
:HMM:PFM   533->642 PF02780 * Transketolase_C 1.1e-10 26.6 109/124  
:BLT:SWISS 6->651 TKT_SINMW 0.0 48.7 %
:PROS 13->33|PS00801|TRANSKETOLASE_1
:PROS 455->471|PS00802|TRANSKETOLASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21408.1 GT:GENE tktB GT:PRODUCT Transketolase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(574732..576690) GB:FROM 574732 GB:TO 576690 GB:DIRECTION - GB:GENE tktB GB:PRODUCT Transketolase GB:NOTE thiamine diphosphate binding domain GB:PROTEIN_ID AAZ21408.1 GB:DB_XREF GI:71062405 GB:GENE:GENE tktB LENGTH 652 SQ:AASEQ MNKLHKDLSNAIRFLSIDAVQKANSGHPGMPMGMADVATVLFKNFLRFNPKNPNWINRDRFVLSAGHGSMLLYSLLHLTGYKSISLNDVKNFRQLKSICAGHPEYHPGTGIETTTGPLGQGIANSVGFAIAEEILKKKLGKEIINHKTYVLAGDGCLMEGISHEAMSLAGHLKLKNLVMLFDNNSISIDGPTSLAVSDNFKKRFESYGWDYILINGHNEREIFSALKKVQNAKRPTVISCKTKIGYGSPNKSGKASSHGSPIGLDEIKLVRKVLDWKHKPFEIPKSILNEWRKIGNKGAKLDSAWSKIYKRKKNLVDKVFKNNFSKALKSEKQNSLRENKSLASRKASELTLNALTRENNTLIGGSADLAGSNNTKTKYHNAINSVNFNGDYIHYGVREHAMAGIMNGLALHSKFIPYGGTFLIFSDYCKPSIRLSALMQQRVIYVMTHDSIGLGEDGPTHQPIEQLSGLRSIPNLNVFRPADRMETIECWELALKNSKTPSVLSLTRQNLEPIRKKYSNMNKCSLGAYEVSRTNKKINLTIFASGSEVNLAIETSHKLAKDKIYSKVISVPCQDIFDLQSKAYKKKILNEAKFKISIEAASTDCWKKYIGTEGLAFGIDTFGKSAPYKEIYKYFGLTVQNISQKAKKLIKS GT:EXON 1|1-652:0| BL:SWS:NREP 1 BL:SWS:REP 6->651|TKT_SINMW|0.0|48.7|645/695| PROS 13->33|PS00801|TRANSKETOLASE_1|PDOC00635| PROS 455->471|PS00802|TRANSKETOLASE_2|PDOC00635| SEG 130->144|iaeeilkkklgkeii| BL:PDB:NREP 1 BL:PDB:REP 6->650|1qgdA|e-159|46.5|641/662| RP:PDB:NREP 1 RP:PDB:REP 4->650|2e6kA|e-110|39.5|625/632| RP:PFM:NREP 3 RP:PFM:REP 8->267|PF00456|3e-83|58.5|258/275|Transketolase_N| RP:PFM:REP 342->509|PF02779|7e-17|36.8|163/172|Transket_pyr| RP:PFM:REP 539->638|PF02780|5e-07|35.4|99/122|Transketolase_C| HM:PFM:NREP 3 HM:PFM:REP 5->313|PF00456|3e-129|51.6|308/333|Transketolase_N| HM:PFM:REP 341->512|PF02779|6.6e-47|35.1|168/178|Transket_pyr| HM:PFM:REP 533->642|PF02780|1.1e-10|26.6|109/124|Transketolase_C| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF02780|IPR005476| GO:PFM GO:0008152|"GO:metabolic process"|PF02780|IPR005476| RP:SCP:NREP 3 RP:SCP:REP 4->314|1ay0A1|6e-94|46.6|307/335|c.36.1.10| RP:SCP:REP 338->511|1dtwB1|5e-43|10.5|171/188|c.36.1.7| RP:SCP:REP 527->651|1ay0A3|2e-23|36.7|120/146|c.48.1.1| HM:SCP:REP 2->320|1l8aA1|2e-105|45.4|313/415|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 320->515|1qgdA1|5.4e-66|45.3|192/195|c.36.1.6|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 519->651|1r9jA3|1.2e-34|37.5|128/0|c.48.1.1|1/1|TK C-terminal domain-like| OP:NHOMO 1866 OP:NHOMOORG 1092 OP:PATTERN ---1--1111111111-121221------2-----22212222-----------11-----222--22 1241311111111111111-1111131111111111213211121121111142311111112112343311111111411211112211121111--22111321141411111111111111123212322222111111121111111121111111111111122112111121111111111111111122222122122222231221122121111113555331211111111111111111111-11----1--123--1--1-1111113421122-11322223323231111111121111111111222431229222222252514222222112112132222211222223212123141111111111214451122322411111111112-22223422221122212333224314211112223311122222222243112221111111111---------------1111211111211114441422111122421111111132232111114211123313111211111111111111121121212-111114111134323343111311211111211111111111111112111122117111111111211111111111111111111221111111132322522223233322-2222233222232222224554321114333333333333333212122221122122222222211111111111112112111122111111111222232111113111111122111231121111111111122222222222322111111111111111122222233--------111----1-11121211111121111111211113121111 11--211-311112122224241333511111111111112111112122234322211111113111111223222-2211111111-2212221535211122211222453321212223233253CW3-43422224225-2222231141112211-12211411611222111J1111142552222221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 651 STR:RPRED 99.8 SQ:SECSTR ccHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHTTcccTTcTTcTTccEEEEccGGGHHHHHHHHHHTTccHccHHHHTTTTcTTcccccccccTTcTTcccccccTTHHHHHHHHHHHHHHHHHHHHccTTccccEEEEEcHHHHHcHHHHHHHHHHHHTTcTTEEEEEEEccEETTEEGGGTccccHHHHHHHTTcEEEEccTTcHHHHHHHHHHHHHccccEEEEEEccTTTTcTTTTTcGGGTccccHHHHHHHHHHHHTccccTTcccHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHTHHHTTcccccccccccccccccHHHHHHHHHHHHGGGcTTEEEEEcccHHHHTcccTTcccccTTcTTccEEEccccHHHHHHHHHHHHHHcccEEEEEEEGGGGGGHHHHHHHHHHHTcccEEEEEcccGGGcTTcTTTccccHHHHHTcTTTcEEEccccHHHHHHHHHHHHHcccccEEEEcccccccccTETcHHHHGGGGGccEEEEccccccEEEEEcTTHHHHHHHHHHHHHHTTccEEEEEcccHHHHHTccHHHHHHHccTTccEEEEcccccTTGGGTccEEHHHEccccccccccTTHHHHHTTccHHHHHHHHHTTcH# DISOP:02AL 652-653| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccccEEEcccccccHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccHHHHcccccccEEEccccHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEccccccEEEEEEccHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEEEccccccccHHHHHHHccccHHHHHHHHHHHHcc //